Computational and Chemical Biology, Fondazione Istituto Italiano di Tecnologia, Genova 16163, Italy.
School of Physics, University College Dublin, Dublin, Ireland.
J Chem Theory Comput. 2020 Jul 14;16(7):4126-4140. doi: 10.1021/acs.jctc.0c00166. Epub 2020 Jun 11.
Thermodynamic and kinetic aspects of crystalline (c-KTP) and amorphous (a-KTP) ketoprofen dissolution in water have been investigated by molecular dynamics simulation focusing on free energy properties. Absolute free energies of all relevant species and phases have been determined by thermodynamic integration on a novel path, first connecting the harmonic to the anharmonic system Hamiltonian at low and then extending the result to the temperature of interest. The free energy required to transfer one ketoprofen molecule from the crystal to the solution is in fair agreement with the experimental value. The absolute free energy of the amorphous form is 19.58 kJ/mol higher than for the crystal, greatly enhancing the ketoprofen concentration in water, although as a metastable species in supersaturated solution. The kinetics of the dissolution process has been analyzed by computing the free energy profile along a reaction coordinate bringing one ketoprofen molecule from the crystal or amorphous phase to the solvated state. This computation confirms that, compared to the crystal form, the dissolution rate is nearly 7 orders of magnitude faster for the amorphous form, providing one further advantage to the latter in terms of bioavailability. The problem of drug solubility, of great practical importance, is used here as a test bed for a refined method to compute absolute free energies, which could be of great interest in biophysics and drug discovery in particular.
通过分子动力学模拟,研究了水结晶(c-KTP)和无定形(a-KTP)酮洛芬溶解的热力学和动力学方面,重点关注自由能特性。通过在新路径上进行热力学积分,确定了所有相关物质和相的绝对自由能,该路径首先在低 将谐波与非谐波系统哈密顿量连接起来,然后将结果扩展到感兴趣的温度。将一个酮洛芬分子从晶体转移到溶液中所需的自由能与实验值相当吻合。无定形形式的绝对自由能比晶体形式高 19.58 kJ/mol,尽管在过饱和溶液中是亚稳态物质,但大大提高了酮洛芬在水中的浓度。通过计算沿着将一个酮洛芬分子从晶体或无定形相带到溶剂化状态的反应坐标的自由能曲线,分析了溶解过程的动力学。该计算证实,与晶体形式相比,无定形形式的溶解速率快了近 7 个数量级,这为后者在生物利用度方面提供了另一个优势。药物溶解度问题具有重要的实际意义,这里将其用作计算绝对自由能的精细方法的测试平台,这在生物物理学和药物发现中特别有意义。