• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

整合预测急性接触毒性和作用模式的定量构效关系模型在蜜蜂(A. mellifera)中的应用:使用开源数据库进行数据整理、性能测试和验证。

Integrating QSAR models predicting acute contact toxicity and mode of action profiling in honey bees (A. mellifera): Data curation using open source databases, performance testing and validation.

机构信息

Institute for Risk Assessment Sciences (IRAS), Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands; Laboratory of Chemistry and Environmental Toxicology, Department of Environmental Health Sciences, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milan, Italy.

Institute for Risk Assessment Sciences (IRAS), Utrecht University, PO Box 80177, 3508 TD Utrecht, the Netherlands; Laboratory of Chemistry and Environmental Toxicology, Department of Environmental Health Sciences, Istituto di Ricerche Farmacologiche Mario Negri IRCCS, Via Mario Negri 2, 20156 Milan, Italy.

出版信息

Sci Total Environ. 2020 Sep 15;735:139243. doi: 10.1016/j.scitotenv.2020.139243. Epub 2020 May 17.

DOI:10.1016/j.scitotenv.2020.139243
PMID:32480144
Abstract

Honey bees (Apis mellifera) provide key ecosystem services as pollinators bridging agriculture, the food chain and ecological communities, thereby ensuring food production and security. Ecological risk assessment of single Plant Protection Products (PPPs) requires an understanding of the exposure and toxicity. In silico tools such as QSAR models can play a major role for the prediction of structural, physico-chemical and pharmacokinetic properties of chemicals as well as toxicity of single and multiple chemicals. Here, the first integrative honey bee QSAR model has been developed for PPPs using EFSA's OpenFoodTox, US-EPA ECOTOX and Pesticide Properties DataBase i) to predict acute contact toxicity (LD) and ii) to profile the Mode of Action (MoA) of pesticides active substances. Three different classification-based and four regression-based models were developed and tested for their performance, thus identifying two models providing the most reliable predictions based on k-NN algorithm. The two-category QSAR model (toxic/non-toxic; n = 411) was validated using sensitivity (=0.93), specificity (=0.85), balanced accuracy (=0.90), and Matthews correlation coefficient (MCC = 0.78) as statistical parameters. The regression-based model (n = 113) was validated for its reliability and robustness (R = 0.74; MAE = 0.52). Current study proposes the MoA profiling for 113 pesticides active substances and the first harmonised MoA classification scheme for acute contact toxicity in honey bees, including LD data points from three different databases. The classification allows to further define MoAs and the target site of PPPs active substances, thus enabling regulators and scientists to refine chemical grouping and toxicity extrapolations for single chemicals and component-based mixture risk assessment of multiple chemicals. Relevant future perspectives are briefly addressed to integrate MoA, adverse outcome pathways (AOPs) and toxicokinetic information for the refinement of single-chemical/combined toxicity predictions and risk estimates at different levels of biological organization in the bee health context.

摘要

蜜蜂(Apis mellifera)作为授粉媒介,在农业、食物链和生态群落之间架起桥梁,提供了关键的生态系统服务,从而确保了粮食生产和安全。单一植保产品(PPPs)的生态风险评估需要了解暴露和毒性。基于结构的定量构效关系(QSAR)模型等计算工具在预测化学品的结构、物理化学和药代动力学性质以及单一和多种化学品的毒性方面可以发挥重要作用。在这里,使用 EFSA 的 OpenFoodTox、美国环保署的 ECOTOX 和农药特性数据库,开发了第一个用于 PPPs 的综合蜜蜂 QSAR 模型,i)预测急性接触毒性(LD),ii)描述农药活性物质的作用模式(MoA)。开发并测试了三种不同的基于分类和四种基于回归的模型,以确定基于 k-NN 算法提供最可靠预测的两个模型。基于两类别 QSAR 模型(有毒/无毒;n=411)的验证使用敏感性(=0.93)、特异性(=0.85)、平衡准确性(=0.90)和马修斯相关系数(MCC=0.78)作为统计参数。基于回归的模型(n=113)的验证可靠性和稳健性(R=0.74;MAE=0.52)。本研究提出了 113 种农药活性物质的 MoA 分析和蜜蜂急性接触毒性的第一个协调作用模式分类方案,包括来自三个不同数据库的 LD 数据点。该分类允许进一步定义 PPPs 活性物质的作用模式和靶标部位,从而使监管机构和科学家能够细化单一化学品的化学分组和毒性外推,以及基于成分的多种化学品混合物风险评估。简要讨论了相关的未来展望,以整合作用模式、不良结局途径(AOPs)和毒代动力学信息,以细化蜜蜂健康背景下不同水平生物组织的单一化学品/组合毒性预测和风险估计。

相似文献

1
Integrating QSAR models predicting acute contact toxicity and mode of action profiling in honey bees (A. mellifera): Data curation using open source databases, performance testing and validation.整合预测急性接触毒性和作用模式的定量构效关系模型在蜜蜂(A. mellifera)中的应用:使用开源数据库进行数据整理、性能测试和验证。
Sci Total Environ. 2020 Sep 15;735:139243. doi: 10.1016/j.scitotenv.2020.139243. Epub 2020 May 17.
2
Predicting acute contact toxicity of pesticides in honeybees (Apis mellifera) through a k-nearest neighbor model.通过k近邻模型预测农药对蜜蜂(西方蜜蜂)的急性接触毒性。
Chemosphere. 2017 Jan;166:438-444. doi: 10.1016/j.chemosphere.2016.09.092. Epub 2016 Oct 2.
3
Predicting acute contact toxicity of organic binary mixtures in honey bees (A. mellifera) through innovative QSAR models.通过创新的定量构效关系模型预测有机二元混合物对蜜蜂(A. mellifera)的急性接触毒性。
Sci Total Environ. 2020 Feb 20;704:135302. doi: 10.1016/j.scitotenv.2019.135302. Epub 2019 Nov 19.
4
Chemometric modeling of plant protection products (PPPs) for the prediction of acute contact toxicity against honey bees (A. mellifera): A 2D-QSAR approach.植物保护产品(PPPs)的定量构效关系模型用于预测对蜜蜂(A. mellifera)的急性接触毒性:一种二维定量构效关系方法。
J Hazard Mater. 2022 Feb 5;423(Pt B):127230. doi: 10.1016/j.jhazmat.2021.127230. Epub 2021 Sep 16.
5
QSAR modeling in ecotoxicological risk assessment: application to the prediction of acute contact toxicity of pesticides on bees (Apis mellifera L.).定量构效关系模型在生态毒理学风险评估中的应用:在预测农药对蜜蜂(Apis mellifera L.)的急性接触毒性中的应用。
Environ Sci Pollut Res Int. 2018 Jan;25(1):896-907. doi: 10.1007/s11356-017-0498-9. Epub 2017 Oct 24.
6
In silico prediction of chemical acute contact toxicity on honey bees via machine learning methods.基于机器学习方法对蜜蜂的化学急性接触毒性进行的计算机预测。
Toxicol In Vitro. 2021 Apr;72:105089. doi: 10.1016/j.tiv.2021.105089. Epub 2021 Jan 11.
7
QSTR modeling for qualitative and quantitative toxicity predictions of diverse chemical pesticides in honey bee for regulatory purposes.用于监管目的的蜜蜂中多种化学农药定性和定量毒性预测的定量构效关系建模
Chem Res Toxicol. 2014 Sep 15;27(9):1504-15. doi: 10.1021/tx500100m. Epub 2014 Aug 28.
8
Classification models for identifying substances exhibiting acute contact toxicity in honeybees (Apis mellifera).用于鉴定对蜜蜂(Apis mellifera)具有急性接触毒性的物质的分类模型。
SAR QSAR Environ Res. 2018 Sep;29(9):743-754. doi: 10.1080/1062936X.2018.1513953.
9
A retrospective analysis of honey bee (Apis mellifera) pesticide toxicity data.回顾性分析蜜蜂(Apis mellifera)农药毒性数据。
PLoS One. 2022 Apr 7;17(4):e0265962. doi: 10.1371/journal.pone.0265962. eCollection 2022.
10
Machine learning - based q-RASAR modeling to predict acute contact toxicity of binary organic pesticide mixtures in honey bees.基于机器学习的 q-RASAR 模型预测二元有机农药混合物对蜜蜂的急性接触毒性。
J Hazard Mater. 2023 Oct 15;460:132358. doi: 10.1016/j.jhazmat.2023.132358. Epub 2023 Aug 22.

引用本文的文献

1
Therapeutic exploration potential of adenosine receptor antagonists through pharmacophore ligand-based modelling and pharmacokinetics studies against Parkinson disease.通过基于药效团配体的建模和针对帕金森病的药代动力学研究探索腺苷受体拮抗剂的治疗潜力。
In Silico Pharmacol. 2025 Jan 25;13(1):17. doi: 10.1007/s40203-025-00305-9. eCollection 2025.
2
Systematic approaches to machine learning models for predicting pesticide toxicity.用于预测农药毒性的机器学习模型的系统方法。
Heliyon. 2024 Mar 25;10(7):e28752. doi: 10.1016/j.heliyon.2024.e28752. eCollection 2024 Apr 15.
3
Cheminformatics and artificial intelligence for accelerating agrochemical discovery.
用于加速农用化学品发现的化学信息学与人工智能
Front Chem. 2023 Nov 29;11:1292027. doi: 10.3389/fchem.2023.1292027. eCollection 2023.
4
TKPlate 1.0: An Open-access platform for toxicokinetic and toxicodynamic modelling of chemicals to implement new approach methodologies in chemical risk assessment.TKPlate 1.0:一个用于化学品毒代动力学和毒效动力学建模的开放获取平台,以在化学风险评估中实施新方法学。
EFSA J. 2023 Nov 14;21(11):e211101. doi: 10.2903/j.efsa.2023.e211101. eCollection 2023 Nov.
5
Complement System Inhibitory Drugs in a Zebrafish () Model: Computational Modeling.补体系统抑制药物在斑马鱼()模型中的应用:计算建模。
Int J Mol Sci. 2023 Sep 9;24(18):13895. doi: 10.3390/ijms241813895.
6
Risk Assessment of Combined Exposure to Multiple Chemicals at the European Food Safety Authority: Principles, Guidance Documents, Applications and Future Challenges.欧洲食品安全局对多种化学物质联合暴露风险评估:原则、指导文件、应用及未来挑战。
Toxins (Basel). 2023 Jan 4;15(1):40. doi: 10.3390/toxins15010040.
7
Toxicity Rank Order (TRO) As a New Approach for Toxicity Prediction by QSAR Models.毒性等级排序(TRO)作为一种通过定量构效关系(QSAR)模型进行毒性预测的新方法。
Int J Environ Res Public Health. 2022 Dec 30;20(1):701. doi: 10.3390/ijerph20010701.
8
In Silico Methods for Environmental Risk Assessment: Principles, Tiered Approaches, Applications, and Future Perspectives.计算毒理学在环境风险评估中的应用:原理、分层方法、应用及未来展望。
Methods Mol Biol. 2022;2425:589-636. doi: 10.1007/978-1-0716-1960-5_23.
9
Whole-Body Acute Contact Toxicity of Formulated Insecticide Mixtures to Blue Orchard Bees ().配制的杀虫剂混合物对蓝果园蜜蜂的全身急性接触毒性() 。 你提供的原文括号里内容不完整,以上是完整翻译。
Toxics. 2021 Mar 17;9(3):61. doi: 10.3390/toxics9030061.