细菌和古菌表型特征数据的综合

A synthesis of bacterial and archaeal phenotypic trait data.

机构信息

Hawai'i Institute of Marine Biology, University of Hawai'i at Mānoa, Kāne'ohe, HI, 96744, USA.

Department of Biological Sciences, Macquarie University, Sydney, NSW, 2109, Australia.

出版信息

Sci Data. 2020 Jun 5;7(1):170. doi: 10.1038/s41597-020-0497-4.

DOI:10.1038/s41597-020-0497-4

PMID:32503990

原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7275036/

Abstract

A synthesis of phenotypic and quantitative genomic traits is provided for bacteria and archaea, in the form of a scripted, reproducible workflow that standardizes and merges 26 sources. The resulting unified dataset covers 14 phenotypic traits, 5 quantitative genomic traits, and 4 environmental characteristics for approximately 170,000 strain-level and 15,000 species-aggregated records. It spans all habitats including soils, marine and fresh waters and sediments, host-associated and thermal. Trait data can find use in clarifying major dimensions of ecological strategy variation across species. They can also be used in conjunction with species and abundance sampling to characterize trait mixtures in communities and responses of traits along environmental gradients.

摘要

为细菌和古菌提供了表型和定量基因组特征的综合，以脚本化、可重复的工作流程的形式，标准化和合并了 26 个来源。由此产生的统一数据集涵盖了大约 170,000 个菌株水平和 15,000 个物种聚集记录的 14 个表型特征、5 个定量基因组特征和 4 个环境特征。它涵盖了所有的栖息地，包括土壤、海洋和淡水以及沉积物、宿主相关和热。特征数据可用于阐明物种间生态策略变化的主要维度。它们还可以与物种和丰度采样结合使用，以描述群落中的特征混合物和特征沿环境梯度的响应。