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在重构系统中20种氨酰-tRNA合成酶的可持续再生,迈向自我合成的人工系统。

Sustainable regeneration of 20 aminoacyl-tRNA synthetases in a reconstituted system toward self-synthesizing artificial systems.

作者信息

Hagino Katsumi, Masuda Keiko, Shimizu Yoshihiro, Ichihashi Norikazu

机构信息

Department of Life Science, Graduate School of Arts and Science, University of Tokyo, Meguro, Tokyo 153-8902, Japan.

Laboratory for Cell-Free Protein Synthesis, RIKEN Center for Biosystems Dynamics Research (BDR), Suita, Osaka 565-0874, Japan.

出版信息

Sci Adv. 2025 Apr 4;11(14):eadt6269. doi: 10.1126/sciadv.adt6269. Epub 2025 Apr 2.

Abstract

In vitro construction of self-reproducible artificial systems is a major challenge in bottom-up synthetic biology. Here, we developed a reconstituted system capable of sustainably regenerating all 20 aminoacyl-transfer RNA synthetases (AARS), which are major components of the translation system. To achieve this, we needed five types of improvements: (i) optimization of AARS sequences for efficient translation, (ii) optimization of the composition of the translation system to enhance translation, (iii) employment of another bacterial AlaRS and SerRS to improve each aminoacylation activity, (iv) diminishing the translational inhibition caused by certain AARS sequences by codon optimization and EF-P addition, and (v) balancing the DNA concentrations of 20 AARS to match each requirement. After these improvements, we succeeded in the sustainable regeneration of all 20 AARS for up to 20 cycles of 2.5-fold serial dilutions. These methodologies and results provide a substantial advancement toward the realization of self-reproducible artificial systems.

摘要

在体外构建可自我复制的人工系统是自下而上合成生物学中的一项重大挑战。在此,我们开发了一种能够可持续再生所有20种氨酰 - 转移RNA合成酶(AARS)的重组系统,这些酶是翻译系统的主要组成部分。为实现这一目标,我们需要进行五种类型的改进:(i)优化AARS序列以实现高效翻译;(ii)优化翻译系统的组成以增强翻译;(iii)使用另一种细菌丙氨酸 - tRNA合成酶(AlaRS)和丝氨酸 - tRNA合成酶(SerRS)来提高每种氨酰化活性;(iv)通过密码子优化和添加延伸因子P(EF - P)减少某些AARS序列引起的翻译抑制;(v)平衡20种AARS的DNA浓度以满足各自需求。经过这些改进,我们成功实现了所有20种AARS的可持续再生,可进行多达20个循环的2.5倍连续稀释。这些方法和结果为实现可自我复制的人工系统取得了重大进展。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/2dd8/11963985/8b5f7d1407d4/sciadv.adt6269-f1.jpg

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