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Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.

作者信息

Skennerton Connor T, Chourey Karuna, Iyer Ramsunder, Hettich Robert L, Tyson Gene W, Orphan Victoria J

机构信息

Division of Geological and Planetary Sciences, California Institute of Technology, Pasadena, California, USA.

Chemical Sciences Division, Oak Ridge National Laboratory, Oak Ridge, Tennessee, USA.

出版信息

mBio. 2017 Aug 1;8(4):e00530-17. doi: 10.1128/mBio.00530-17.


DOI:10.1128/mBio.00530-17
PMID:28765215
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC5539420/
Abstract

The anaerobic oxidation of methane by anaerobic methanotrophic (ANME) archaea in syntrophic partnership with deltaproteobacterial sulfate-reducing bacteria (SRB) is the primary mechanism for methane removal in ocean sediments. The mechanism of their syntrophy has been the subject of much research as traditional intermediate compounds, such as hydrogen and formate, failed to decouple the partners. Recent findings have indicated the potential for extracellular electron transfer from ANME archaea to SRB, though it is unclear how extracellular electrons are integrated into the metabolism of the SRB partner. We used metagenomics to reconstruct eight genomes from the globally distributed SEEP-SRB1 clade of ANME partner bacteria to determine what genomic features are required for syntrophy. The SEEP-SRB1 genomes contain large multiheme cytochromes that were not found in previously described free-living SRB and also lack periplasmic hydrogenases that may prevent an independent lifestyle without an extracellular source of electrons from ANME archaea. Metaproteomics revealed the expression of these cytochromes at methane seep sediments from three sites along the Pacific coast of the United States. Phylogenetic analysis showed that these cytochromes appear to have been horizontally transferred from metal-respiring members of the such as and may allow these syntrophic SRB to accept extracellular electrons in place of other chemical/organic electron donors. Some archaea, known as anaerobic methanotrophs, are capable of converting methane into carbon dioxide when they are growing syntopically with sulfate-reducing bacteria. This partnership is the primary mechanism for methane removal in ocean sediments; however, there is still much to learn about how this syntrophy works. Previous studies have failed to identify the metabolic intermediate, such as hydrogen or formate, that is passed between partners. However, recent analysis of methanotrophic archaea has suggested that the syntrophy is formed through direct electron transfer. In this research, we analyzed the genomes of multiple partner bacteria and showed that they also contain the genes necessary to perform extracellular electron transfer, which are absent in related bacteria that do not form syntrophic partnerships with anaerobic methanotrophs. This genomic evidence shows a possible mechanism for direct electron transfer from methanotrophic archaea into the metabolism of the partner bacteria.

摘要
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/68d62939b5d8/mbo0041734100004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/7de3a1d0b84b/mbo0041734100001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/0abb7042af71/mbo0041734100002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/0e8d4fc0c834/mbo0041734100003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/68d62939b5d8/mbo0041734100004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/7de3a1d0b84b/mbo0041734100001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/0abb7042af71/mbo0041734100002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/0e8d4fc0c834/mbo0041734100003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ffda/5539420/68d62939b5d8/mbo0041734100004.jpg

相似文献

[1]
Methane-Fueled Syntrophy through Extracellular Electron Transfer: Uncovering the Genomic Traits Conserved within Diverse Bacterial Partners of Anaerobic Methanotrophic Archaea.

mBio. 2017-8-1

[2]
Community Structure and Microbial Associations in Sediment-Free Methanotrophic Enrichment Cultures from a Marine Methane Seep.

Appl Environ Microbiol. 2022-6-14

[3]
Intercellular wiring enables electron transfer between methanotrophic archaea and bacteria.

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[4]
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[5]
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[6]
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[7]
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[8]
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[9]
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[10]
Subgroup Characteristics of Marine Methane-Oxidizing ANME-2 Archaea and Their Syntrophic Partners as Revealed by Integrated Multimodal Analytical Microscopy.

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引用本文的文献

[1]
Redox conduction facilitates direct interspecies electron transport in anaerobic methanotrophic consortia.

Sci Adv. 2025-8-22

[2]
Methanotrophic Flexibility of 'Ca. Methanoperedens' and Its Interactions With Sulphate-Reducing Bacteria in the Sediment of Meromictic Lake Cadagno.

Environ Microbiol. 2025-7

[3]
Salinization alters microbial methane cycling in freshwater sediments.

Environ Microbiome. 2025-6-17

[4]
Chemoorganoautotrophic lifestyle of the anaerobic enrichment culture N47 growing on naphthalene.

Commun Biol. 2025-6-4

[5]
CABO-16S-a Combined Archaea, Bacteria, Organelle 16S rRNA database framework for amplicon analysis of prokaryotes and eukaryotes in environmental samples.

NAR Genom Bioinform. 2025-5-19

[6]
Diversity, Methane Oxidation Activity, and Metabolic Potential of Microbial Communities in Terrestrial Mud Volcanos of the Taman Peninsula.

Microorganisms. 2024-7-1

[7]
Different outer membrane -type cytochromes are involved in direct interspecies electron transfer to or species.

mLife. 2022-9-23

[8]
Potential coupling of microbial methane, nitrogen, and sulphur cycling in the Okinawa Trough cold seep sediments.

Microbiol Spectr. 2024-6-4

[9]
Microbially induced precipitation of silica by anaerobic methane-oxidizing consortia and implications for microbial fossil preservation.

Proc Natl Acad Sci U S A. 2023-12-19

[10]
Physiological potential and evolutionary trajectories of syntrophic sulfate-reducing bacterial partners of anaerobic methanotrophic archaea.

PLoS Biol. 2023-9

本文引用的文献

[1]
Reconstructing a hydrogen-driven microbial metabolic network in Opalinus Clay rock.

Nat Commun. 2016-10-14

[2]
Extracellular electron transfer mechanisms between microorganisms and minerals.

Nat Rev Microbiol. 2016-8-30

[3]
Metabolic Regulation as a Consequence of Anaerobic 5-Methylthioadenosine Recycling in Rhodospirillum rubrum.

mBio. 2016-7-12

[4]
Proteomic Stable Isotope Probing Reveals Biosynthesis Dynamics of Slow Growing Methane Based Microbial Communities.

Front Microbiol. 2016-4-29

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Phylogenomic analysis of Candidatus 'Izimaplasma' species: free-living representatives from a Tenericutes clade found in methane seeps.

ISME J. 2016-11

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Candidatus Desulfofervidus auxilii, a hydrogenotrophic sulfate-reducing bacterium involved in the thermophilic anaerobic oxidation of methane.

Environ Microbiol. 2016-9

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Mol Biol Evol. 2016-6

[8]
Artificial electron acceptors decouple archaeal methane oxidation from sulfate reduction.

Science. 2016-2-12

[9]
Metabolic Capabilities of Microorganisms Involved in and Associated with the Anaerobic Oxidation of Methane.

Front Microbiol. 2016-2-2

[10]
Electron transfer between the QmoABC membrane complex and adenosine 5'-phosphosulfate reductase.

Biochim Biophys Acta. 2016-4

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