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从 UPM1 中β-葡萄糖苷水解酶家族 1 的计算机模拟特性分析

In-Silico Characterization of Glycosyl Hydrolase Family 1 β-Glucosidase from UPM1.

机构信息

Department of Bioprocess Technology, Faculty of Biotechnology and Biomolecular Sciences, Universiti Putra Malaysia, Serdang 43400 UPM, Selangor, Malaysia.

School of Bioprocess Engineering, Universiti Malaysia Perlis, Kompleks Pusat Pengajian Jejawi 3, Arau 02600, Perlis, Malaysia.

出版信息

Int J Mol Sci. 2020 Jun 4;21(11):4035. doi: 10.3390/ijms21114035.

Abstract

β-glucosidases (Bgl) are widely utilized for releasing non-reducing terminal glucosyl residues. Nevertheless, feedback inhibition by glucose end product has limited its application. A noticeable exception has been found for β-glucosidases of the glycoside hydrolase (GH) family 1, which exhibit tolerance and even stimulation by glucose. In this study, using local isolate UPM1, the gene encoding β-glucosidase from GH family 1, hereafter designated as , was isolated and characterized via in-silico analyses. A comparison of enzyme activity was subsequently made by heterologous expression in BL21(DE3). The presence of N-terminal signature, cis-peptide bonds, conserved active site motifs, non-proline cis peptide bonds, substrate binding, and a lone conserved stabilizing tryptophan (W) residue confirms the identity of sp. GH family 1 β-glucosidase isolated. Glucose tolerance was suggested by the presence of 14 of 22 known consensus residues, along with corresponding residues L167 and P172, crucial in the retention of the active site's narrow cavity. Retention of 40% of relative hydrolytic activity on ρ-nitrophenyl-β-D-glucopyranoside (ρNPG) in a concentration of 0.2 M glucose was comparable to that of GH family 1 β-glucosidase (Cel1A) from . This research thus underlines the potential in the prediction of enzymatic function, and of industrial importance, glucose tolerance of family 1 β-glucosidases following relevant in-silico analyses.

摘要

β-葡萄糖苷酶(Bgl)被广泛用于释放非还原末端的葡萄糖基残基。然而,葡萄糖终产物的反馈抑制限制了其应用。糖苷水解酶(GH)家族 1 的β-葡萄糖苷酶是一个明显的例外,它对葡萄糖表现出耐受性甚至刺激作用。在这项研究中,利用本地分离株 UPM1,从 GH 家族 1 中编码β-葡萄糖苷酶的基因,随后被命名为 ,通过计算机分析进行了分离和表征。随后通过在 BL21(DE3)中异源表达进行了酶活性比较。N 端特征、顺式肽键、保守的活性位点基序、非脯氨酸顺式肽键、底物结合和一个保守的稳定色氨酸(W)残基的存在证实了 sp 的身份。GH 家族 1 的β-葡萄糖苷酶。22 个已知的共识残基中有 14 个存在葡萄糖耐受性,以及对应的残基 L167 和 P172,这对于保持活性位点狭窄腔至关重要。在 0.2 M 葡萄糖浓度下,ρ-硝基苯-β-D-葡萄糖苷(ρNPG)的相对水解活性保留了 40%,与 GH 家族 1 的β-葡萄糖苷酶(Cel1A)相当。因此,这项研究强调了通过相关的计算机分析预测酶功能的潜力,以及家族 1 β-葡萄糖苷酶的工业重要性,即葡萄糖耐受性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/a86d/7311958/00185d400c20/ijms-21-04035-g001.jpg

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