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Pdc2/Pat1 增加了 Lsm1-7 复合物结合的衰变因子和 RNA 的范围。

Pdc2/Pat1 increases the range of decay factors and RNA bound by the Lsm1-7 complex.

机构信息

Chemistry and Chemical Biology Graduate Program, University of California, San Francisco, San Francisco, California 94158, USA.

Department of Pharmaceutical Chemistry, University of California, San Francisco, San Francisco, California 94158, USA.

出版信息

RNA. 2020 Oct;26(10):1380-1388. doi: 10.1261/rna.075812.120. Epub 2020 Jun 8.

Abstract

Pat1, known as Pdc2 in fission yeast, promotes the activation and assembly of multiple proteins during mRNA decay. After deadenylation, the Pat1/Lsm1-7 complex binds to transcripts containing oligo(A) tails, which can be modified by the addition of several terminal uridine residues. Pat1 enhances Lsm1-7 binding to the 3' end, but it is unknown how this interaction is influenced by nucleotide composition. Here we examine Pat1/Lsm1-7 binding to a series of oligoribonucleotides containing different A/U contents using recombinant purified proteins from fission yeast. We observe a positive correlation between fractional uridine content and Lsm1-7 binding affinity. Addition of Pat1 broadens RNA specificity of Lsm1-7 by enhancing binding to A-rich RNAs and increases cooperativity on all oligonucleotides tested. Consistent with increased cooperativity, Pat1 promotes multimerization of the Lsm1-7 complex, which is potentiated by RNA binding. Furthermore, the inherent ability of Pat1 to multimerize drives liquid-liquid phase separation with multivalent decapping enzyme complexes of Dcp1/Dcp2. Our results uncover how Pat1 regulates RNA binding and higher order assembly by mRNA decay factors.

摘要

Pat1,在裂殖酵母中被称为 Pdc2,在 mRNA 降解过程中促进多种蛋白质的激活和组装。在去腺苷酸化后,Pat1/Lsm1-7 复合物结合到含有寡聚(A)尾巴的转录本上,寡聚(A)尾巴可以通过添加几个末端尿嘧啶残基进行修饰。Pat1 增强了 Lsm1-7 与 3' 末端的结合,但尚不清楚这种相互作用如何受到核苷酸组成的影响。在这里,我们使用来自裂殖酵母的重组纯化蛋白,研究了一系列含有不同 A/U 含量的寡核糖核苷酸中 Pat1/Lsm1-7 的结合情况。我们观察到,尿嘧啶含量与 Lsm1-7 结合亲和力呈正相关。Pat1 的加入通过增强对富含 A 的 RNA 的结合,拓宽了 Lsm1-7 的 RNA 特异性,并增加了所有测试寡核苷酸的协同性。与协同性增加一致,Pat1 促进了 Lsm1-7 复合物的多聚化,而 RNA 结合则增强了这种多聚化。此外,Pat1 自身多聚化的能力驱动了与多价去帽酶复合物 Dcp1/Dcp2 的液-液相分离。我们的结果揭示了 Pat1 如何通过 mRNA 降解因子调节 RNA 结合和更高阶的组装。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f279/7491320/c6dc29f8ba3d/1380f01.jpg

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