HHMI, UT Southwestern Medical Center, Dallas TX 75390.
Department of Biophysics, UT Southwestern Medical Center, Dallas, TX 75390.
Proc Natl Acad Sci U S A. 2023 Apr 4;120(14):e2214064120. doi: 10.1073/pnas.2214064120. Epub 2023 Mar 27.
Many biomolecular condensates appear to form through liquid-liquid phase separation (LLPS). Individual condensate components can often undergo LLPS in vitro, capturing some features of the native structures. However, natural condensates contain dozens of components with different concentrations, dynamics, and contributions to compartment formation. Most biochemical reconstitutions of condensates have not benefited from quantitative knowledge of these cellular features nor attempted to capture natural complexity. Here, we build on prior quantitative cellular studies to reconstitute yeast RNA processing bodies (P bodies) from purified components. Individually, five of the seven highly concentrated P-body proteins form homotypic condensates at cellular protein and salt concentrations, using both structured domains and intrinsically disordered regions. Combining the seven proteins together at their cellular concentrations with RNA yields phase-separated droplets with partition coefficients and dynamics of most proteins in reasonable agreement with cellular values. RNA delays the maturation of proteins within and promotes the reversibility of, P bodies. Our ability to quantitatively recapitulate the composition and dynamics of a condensate from its most concentrated components suggests that simple interactions between these components carry much of the information that defines the physical properties of the cellular structure.
许多生物分子凝聚物似乎通过液-液相分离(LLPS)形成。单个凝聚物成分通常可以在体外经历 LLPS,从而捕获一些天然结构的特征。然而,天然凝聚物包含数十种具有不同浓度、动态和对隔室形成贡献的成分。大多数对凝聚物的生化重构都没有受益于对这些细胞特征的定量知识,也没有试图捕获自然复杂性。在这里,我们基于先前的定量细胞研究,从纯化的成分中重新构建酵母 RNA 处理体(P 体)。在细胞蛋白和盐浓度下,单独的七个高度浓缩的 P 体蛋白中的五个使用结构域和内在无序区域形成同型凝聚物。将七种蛋白质在其细胞浓度下与 RNA 一起组合在一起,会产生相分离的液滴,其中大多数蛋白质的分配系数和动力学与细胞值具有合理的一致性。RNA 延迟了 P 体内部蛋白质的成熟,并促进了 P 体的可逆性。我们能够从最浓缩的成分定量重现凝聚物的组成和动力学,这表明这些成分之间的简单相互作用承载了定义细胞结构物理性质的大部分信息。