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Genome-based phylogeny and taxonomy of the 'Enterobacteriales': proposal for Enterobacterales ord. nov. divided into the families Enterobacteriaceae, Erwiniaceae fam. nov., Pectobacteriaceae fam. nov., Yersiniaceae fam. nov., Hafniaceae fam. nov., Morganellaceae fam. nov., and Budviciaceae fam. nov.基于基因组的“肠杆菌目”系统发育与分类学:肠杆菌目新目提案,该目分为肠杆菌科、新科欧文氏菌科、新科果胶杆菌科、新科耶尔森氏菌科、新科哈夫尼菌科、新科摩根氏菌科和新科布德维氏菌科。
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Deep Sequencing of Random Mutant Libraries Reveals the Active Site of the Narrow Specificity CphA Metallo-β-Lactamase is Fragile to Mutations.随机突变文库的深度测序揭示了窄特异性 CphA 金属β-内酰胺酶的活性位点对突变很脆弱。
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耶尔森氏菌属莫拉菌新的B2类金属β-内酰胺酶YEM-1对碳青霉烯水解的突变效应

Mutational Effects on Carbapenem Hydrolysis of YEM-1, a New Subclass B2 Metallo-β-Lactamase from Yersinia mollaretii.

作者信息

Mercuri Paola Sandra, Esposito Roberto, Blétard Sylvie, Di Costanzo Stefano, Perilli Mariagrazia, Kerff Frédéric, Galleni Moreno

机构信息

Macromolécules Biologiques, Centre d'Ingénierie des Protéines, InBioS, Université de Liège, Liège, Belgium

Macromolécules Biologiques, Centre d'Ingénierie des Protéines, InBioS, Université de Liège, Liège, Belgium.

出版信息

Antimicrob Agents Chemother. 2020 Aug 20;64(9). doi: 10.1128/AAC.00105-20.

DOI:10.1128/AAC.00105-20
PMID:32540974
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7449184/
Abstract

Analysis of the genome sequence of ATCC 43969 identified the gene, encoding YEM-1, a putative subclass B2 metallo-β-lactamase. The objectives of our work were to produce and purify YEM-1 and to complete its kinetic characterization. YEM-1 displayed the narrowest substrate range among known subclass B2 metallo-β-lactamases, since it can hydrolyze imipenem, but not other carbapenems, such as biapenem, meropenem, doripenem, and ertapenem, with high catalytic efficiency. A possible explanation of this activity profile is the presence of tyrosine at residue 67 (loop L1), threonine at residue 156 (loop L2), and serine at residue 236 (loop L3). We showed that replacement of Y67 broadened the activity profile of the enzyme for all carbapenems but still resulted in poor activity toward the other β-lactam classes.

摘要

对ATCC 43969的基因组序列分析鉴定出了编码YEM-1的基因,YEM-1是一种推定的B2亚类金属β-内酰胺酶。我们工作的目标是生产和纯化YEM-1,并完成其动力学表征。YEM-1在已知的B2亚类金属β-内酰胺酶中底物范围最窄,因为它能够高效水解亚胺培南,但不能水解其他碳青霉烯类药物,如比阿培南、美罗培南、多立培南和厄他培南。对此活性谱的一种可能解释是,在第67位残基(环L1)处存在酪氨酸,在第156位残基(环L2)处存在苏氨酸,在第236位残基(环L3)处存在丝氨酸。我们发现,替换Y67拓宽了该酶对所有碳青霉烯类药物的活性谱,但对其他β-内酰胺类药物的活性仍然较差。