Departments of Molecular Biology and Biochemistry, Pharmaceutical Sciences, and Chemistry, University of California, Irvine, California 92697-3900, United States.
Biochemistry. 2020 Jul 28;59(29):2743-2750. doi: 10.1021/acs.biochem.0c00366. Epub 2020 Jul 15.
The bacterial cytochrome P450cam catalyzes the oxidation of camphor to 5--hydroxycamphor as the first step in the oxidative assimilation of camphor as a carbon/energy source. CYP101D1 is another bacterial P450 that catalyzes the same reaction. A third P450 (P450tcu) has recently been discovered that has ≈86% sequence identity to P450cam as well as very similar enzymatic properties. P450tcu, however, exhibits three unusual features not found in P450cam. First, we observe product in at least two orientations in the X-ray structure that indicates that, unlike the case for P450cam, X-ray-generated reducing equivalents can drive substrate hydroxylation . We postulate, on the basis of molecular dynamics simulations, that greater flexibility in P450tcu enables easier access of protons to the active site and, together with X-ray driven reduction, results in O activation and substrate hydroxylation. Second, the characteristic low-spin to high-spin transition when camphor binds occurs immediately with P450cam but is very slow in P450tcu. Third, isothermal titration calorimetry shows that in P450cam substrate binding is entropically driven with a Δ of >0 while in P450tcu with a Δ of <0 with a more modest change in -Δ. These results indicate that despite nearly identical structures and enzymatic properties, these two P450s exhibit quite different properties most likely related to differences in conformational dynamics.
细菌细胞色素 P450cam 催化莰酮氧化为 5--羟基莰酮,作为氧化同化莰酮作为碳/能源来源的第一步。CYP101D1 是另一种催化相同反应的细菌 P450。最近发现了第三种 P450(P450tcu),它与 P450cam 的序列同一性约为 86%,并且具有非常相似的酶学特性。然而,P450tcu 具有三个在 P450cam 中未发现的不寻常特征。首先,我们在 X 射线结构中观察到产物至少有两种取向,这表明与 P450cam 不同,X 射线产生的还原当量可以驱动底物羟化。基于分子动力学模拟,我们假设 P450tcu 更大的灵活性使得质子更容易进入活性位点,并与 X 射线驱动的还原一起,导致 O 活化和底物羟化。其次,当莰酮结合时,特征性的低自旋到高自旋转变立即发生在 P450cam 中,但在 P450tcu 中非常缓慢。第三,等温滴定量热法表明,在 P450cam 中,底物结合是熵驱动的,Δ>0,而在 P450tcu 中,Δ<0,Δ的变化较小。这些结果表明,尽管结构和酶学特性几乎相同,但这两种 P450 表现出截然不同的特性,这很可能与构象动力学的差异有关。