噬菌体仙岳的特性鉴定与基因组序列分析
Characterization and Genome Sequence of Phage XianYue.
作者信息
Rhinehart Wesley D, Laidlaw Amanda J, O'Neal Alexis M, Toller Jessica A, Segura-Totten Miriam, Shanks Ryan A, Kanak Alison E
机构信息
Department of Biology, University of North Georgia, Dahlonega, Georgia, USA.
Department of Biology, University of North Georgia, Dahlonega, Georgia, USA
出版信息
Microbiol Resour Announc. 2020 Jun 18;9(25):e00459-20. doi: 10.1128/MRA.00459-20.
Abstract
Novel mycobacteriophage XianYue was isolated in Northeast Georgia and infects mc155. Actinobacteriophages which share at least 50% nucleotide identity are grouped into clusters, with XianYue in cluster A2. Its genome is 52,907 bp with 91 open reading frames (ORFs) and 62.9% GC content, and it shares 86.51% nucleotide identity with mycobacteriophage Trixie.
摘要
新型分枝杆菌噬菌体“仙岳”是在佐治亚州东北部分离出来的，可感染mc155。核苷酸同一性至少为50%的放线菌噬菌体被归为簇，“仙岳”属于A2簇。其基因组为52907bp，有91个开放阅读框（ORF），GC含量为62.9%，与分枝杆菌噬菌体“崔西”的核苷酸同一性为86.51%。
相似文献
1
Characterization and Genome Sequence of Phage XianYue.噬菌体仙岳的特性鉴定与基因组序列分析
Microbiol Resour Announc. 2020 Jun 18;9(25):e00459-20. doi: 10.1128/MRA.00459-20.
2
Characterization and Genome Sequence of Arthrobacter Phage Iter.节杆菌噬菌体Iter的特性分析与基因组序列
Microbiol Resour Announc. 2022 Oct 20;11(10):e0053822. doi: 10.1128/mra.00538-22. Epub 2022 Sep 6.
3
Complete genome sequence of Mycobacteriophage Eaglepride.分枝杆菌噬菌体Eaglepride的全基因组序列
Microbiol Resour Announc. 2024 Nov 12;13(11):e0059924. doi: 10.1128/mra.00599-24. Epub 2024 Sep 30.
4
Complete Genome Sequence of Mycobacteriophage Fulbright.分枝杆菌噬菌体富布赖特的全基因组序列
Microbiol Resour Announc. 2021 Mar 18;10(11):e00123-21. doi: 10.1128/MRA.00123-21.
5
Genomic and proteomic portrait of a novel mycobacteriophage SWU2 isolated from China.中国分离的一株新型分枝杆菌噬菌体 SWU2 的基因组和蛋白质组特征。
Infect Genet Evol. 2021 Jan;87:104665. doi: 10.1016/j.meegid.2020.104665. Epub 2020 Dec 3.
6
Characterization and genome analysis of G1 sub-cluster mycobacteriophage Lang.兰氏 G1 亚群分枝杆菌噬菌体的特性与基因组分析
Infect Genet Evol. 2023 Apr;109:105417. doi: 10.1016/j.meegid.2023.105417. Epub 2023 Feb 16.
7
Genomic sequence identification of phage Ascela.噬菌体阿斯克拉的基因组序列鉴定
Microbiol Resour Announc. 2023 Nov 16;12(11):e0077623. doi: 10.1128/MRA.00776-23. Epub 2023 Oct 31.
8
Genome Sequence of Mycobacterium Phage LilHazelnut.分枝杆菌噬菌体小榛子的基因组序列
Microbiol Resour Announc. 2019 May 9;8(19):e00431-19. doi: 10.1128/MRA.00431-19.
9
Characterization and genome analysis of B1 sub-cluster mycobacteriophage PDRPxv.B1 亚群分枝杆菌噬菌体 PDRPxv 的特性与基因组分析。
Virus Res. 2020 Apr 2;279:197884. doi: 10.1016/j.virusres.2020.197884. Epub 2020 Jan 22.
10
A mycobacteriophage genomics approach to identify novel mycobacteriophage proteins with mycobactericidal properties.一种基于分枝杆菌噬菌体基因组学的方法，用于鉴定具有杀菌特性的新型分枝杆菌噬菌体蛋白。
Microbiology (Reading). 2019 Jul;165(7):722-736. doi: 10.1099/mic.0.000810. Epub 2019 May 15.
本文引用的文献
1
An inclusive Research Education Community (iREC): Impact of the SEA-PHAGES program on research outcomes and student learning.包容的研究教育社区（iREC）：SEA-PHAGES 计划对研究成果和学生学习的影响。
Proc Natl Acad Sci U S A. 2017 Dec 19;114(51):13531-13536. doi: 10.1073/pnas.1718188115. Epub 2017 Dec 5.
2
Sequencing, Assembling, and Finishing Complete Bacteriophage Genomes.完整噬菌体基因组的测序、组装与完成
Methods Mol Biol. 2018;1681:109-125. doi: 10.1007/978-1-4939-7343-9_9.
3
The secret lives of mycobacteriophages.分枝杆菌噬菌体的秘密生活。
Adv Virus Res. 2012;82:179-288. doi: 10.1016/B978-0-12-394621-8.00015-7.
4
Mechanisms for activating bacterial RNA polymerase.激活细菌 RNA 聚合酶的机制。
FEMS Microbiol Rev. 2010 Sep;34(5):611-27. doi: 10.1111/j.1574-6976.2010.00239.x. Epub 2010 Jun 7.
5
Identification of the Geobacter metallireducens bamVW two-component system, involved in transcriptional regulation of aromatic degradation.鉴定参与芳香族降解转录调控的 Geobacter metallireducens bamVW 双组分系统。
Appl Environ Microbiol. 2010 Jan;76(1):383-5. doi: 10.1128/AEM.02255-09. Epub 2009 Nov 13.
6
Anaerobic catabolism of aromatic compounds: a genetic and genomic view.芳香族化合物的厌氧分解代谢：遗传学与基因组学视角
Microbiol Mol Biol Rev. 2009 Mar;73(1):71-133. doi: 10.1128/MMBR.00021-08.
7
Identifying bacterial genes and endosymbiont DNA with Glimmer.使用Glimmer识别细菌基因和内共生体DNA。
Bioinformatics. 2007 Mar 15;23(6):673-9. doi: 10.1093/bioinformatics/btm009. Epub 2007 Jan 19.
8
GeneMark: web software for gene finding in prokaryotes, eukaryotes and viruses.基因标记：用于在原核生物、真核生物和病毒中寻找基因的网络软件。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W451-4. doi: 10.1093/nar/gki487.
9
The HHpred interactive server for protein homology detection and structure prediction.用于蛋白质同源性检测和结构预测的HHpred交互式服务器。
Nucleic Acids Res. 2005 Jul 1;33(Web Server issue):W244-8. doi: 10.1093/nar/gki408.
10
ARAGORN, a program to detect tRNA genes and tmRNA genes in nucleotide sequences.ARAGORN，一个用于在核苷酸序列中检测tRNA基因和tmRNA基因的程序。
Nucleic Acids Res. 2004 Jan 2;32(1):11-6. doi: 10.1093/nar/gkh152. Print 2004.
Zotero 插件