sanguinis MOL361（DSM 14220）的全基因组序列及注释
Complete Genome Sequence and Annotation for Turicibacter sanguinis MOL361 (DSM 14220).
作者信息
Maki Joel J, Nielsen Daniel W, Looft Torey
机构信息
Food Safety and Enteric Pathogens Research Unit, National Animal Disease Center, Agricultural Research Service, U.S. Department of Agriculture, Ames, Iowa, USA.
Interdepartmental Microbiology Graduate Program, Iowa State University, Ames, Iowa, USA.
出版信息
Microbiol Resour Announc. 2020 Jun 18;9(25):e00475-20. doi: 10.1128/MRA.00475-20.
Abstract
MOL361 (DSM 14220) is the reference and type strain for the genus, commonly found in the intestinal tract of animal species. Long-read sequencing was performed on this strain to complement publicly available Illumina HiSeq-based data, producing a complete annotated genome sequence.
摘要
MOL361（DSM 14220）是该属的参考菌株和模式菌株，常见于动物物种的肠道中。对该菌株进行了长读长测序，以补充公开可用的基于Illumina HiSeq的数据，从而产生了一个完整的注释基因组序列。
相似文献
1
Complete Genome Sequence and Annotation for Turicibacter sanguinis MOL361 (DSM 14220).sanguinis MOL361（DSM 14220）的全基因组序列及注释
Microbiol Resour Announc. 2020 Jun 18;9(25):e00475-20. doi: 10.1128/MRA.00475-20.
2
Genome sequencing and annotation of Amycolatopsis vancoresmycina strain DSM 44592(T).万古霉素游动放线菌DSM 44592(T)菌株的基因组测序与注释
Genom Data. 2013 Nov 27;2:16-7. doi: 10.1016/j.gdata.2013.10.006. eCollection 2014 Dec.
3
Bloodstream co-infection with and in a patient with a flare of ulcerative colitis - A case report and review of the literature.一名溃疡性结肠炎发作患者的血流中同时感染[具体病原体1]和[具体病原体2]——病例报告及文献综述
IDCases. 2024 Sep 10;38:e02080. doi: 10.1016/j.idcr.2024.e02080. eCollection 2024.
4
Genomics Using MinION and Illumina Sequencing Enables Genome Completion and Correction.使用 MinION 和 Illumina 测序进行基因组学研究可实现基因组的完成和纠错。
mSphere. 2018 Jul 5;3(4):e00269-18. doi: 10.1128/mSphere.00269-18.
5
Dissection of the genus Actinobaculum: Reclassification of Actinobaculum schaalii Lawson et al. 1997 and Actinobaculum urinale Hall et al. 2003 as Actinotignum schaalii gen. nov., comb. nov. and Actinotignum urinale comb. nov., description of Actinotignum sanguinis sp. nov. and emended descriptions of the genus Actinobaculum and Actinobaculum suis; and re-examination of the culture deposited as Actinobaculum massiliense CCUG 47753T ( = DSM 19118T), revealing that it does not represent a strain of this species.放线杆菌属的分类研究：将 Schaali 放线杆菌（Lawson 等人，1997 年）和尿放线杆菌（Hall 等人，2003 年）重新分类为 Schaali 放线芽孢菌新属、新组合，尿放线芽孢菌新组合，描述血放线芽孢菌新种，并对放线杆菌属和猪放线杆菌进行修订描述；重新检测保藏的马赛放线杆菌 CCUG 47753T（= DSM 19118T）培养物，发现其并非该物种的菌株。
Int J Syst Evol Microbiol. 2015 Feb;65(Pt 2):615-624. doi: 10.1099/ijs.0.069294-0. Epub 2014 Nov 18.
6
Genome sequencing and annotation of Amycolatopsis azurea DSM 43854(T).蔚蓝拟无枝酸菌DSM 43854(T)的基因组测序与注释
Genom Data. 2014 Mar 12;2:44-5. doi: 10.1016/j.gdata.2013.12.003. eCollection 2014 Dec.
7
Turicibacter sanguinis gen. nov., sp. nov., a novel anaerobic, Gram-positive bacterium.血红突厥杆菌，新属，新种，一种新型厌氧革兰氏阳性菌。
Int J Syst Evol Microbiol. 2002 Jul;52(Pt 4):1263-1266. doi: 10.1099/00207713-52-4-1263.
8
De novo assembly and annotation of the whole genomic analysis of Vibrio campbellii RT-1 strain, from infected shrimp: Litopenaeus vannamei.从头组装和注释感染虾（凡纳滨对虾）的坎贝尔氏弧菌 RT-1 株的全基因组分析。
Microb Pathog. 2017 Dec;113:372-377. doi: 10.1016/j.micpath.2017.11.016. Epub 2017 Nov 11.
9
Genomic and genetic sequence information of strains assigned to the genus reveal the great heterogeneity of the group and identify strain DSM 123 as the authentic type strain of this species.揭示了该属菌株的基因组和遗传序列信息具有很大的异质性，并将菌株 DSM 123 鉴定为该物种的正宗模式株。
Int J Syst Evol Microbiol. 2020 Jun;70(6):3932-3938. doi: 10.1099/ijsem.0.004077. Epub 2020 Jun 3.
引用本文的文献
1
Bacteroides uniformis-generated hexadecanedioic acid ameliorates metabolic-associated fatty liver disease.均匀拟杆菌产生的十六烷二酸可改善代谢相关脂肪性肝病。
Gut Microbes. 2025 Dec;17(1):2508433. doi: 10.1080/19490976.2025.2508433. Epub 2025 May 25.
2
Gut microbiome composition and metabolic activity in metabolic-associated fatty liver disease.代谢相关脂肪性肝病中的肠道微生物群组成与代谢活性
Virulence. 2025 Dec;16(1):2482158. doi: 10.1080/21505594.2025.2482158. Epub 2025 Mar 28.
3
Bloodstream co-infection with and in a patient with a flare of ulcerative colitis - A case report and review of the literature.一名溃疡性结肠炎发作患者的血流中同时感染[具体病原体1]和[具体病原体2]——病例报告及文献综述
IDCases. 2024 Sep 10;38:e02080. doi: 10.1016/j.idcr.2024.e02080. eCollection 2024.
4
sp. nov., isolated from faeces of heart failure mouse model.sp. nov.，从心力衰竭小鼠模型的粪便中分离得到。
Int J Syst Evol Microbiol. 2024 May;74(5). doi: 10.1099/ijsem.0.006379.
5
Mucosal Metabolomic Signatures in Chronic Colitis: Novel Insights into the Pathophysiology of Inflammatory Bowel Disease.慢性结肠炎中的黏膜代谢组学特征：对炎症性肠病病理生理学的新见解
Metabolites. 2023 Jul 23;13(7):873. doi: 10.3390/metabo13070873.
6
Gut microbiota Turicibacter strains differentially modify bile acids and host lipids.肠道微生物组 Turicibacter 菌株差异地调节胆汁酸和宿主脂质。
Nat Commun. 2023 Jun 20;14(1):3669. doi: 10.1038/s41467-023-39403-7.
7
Human milk microbial species are associated with infant head-circumference during early and late lactation in Guatemalan mother-infant dyads.在危地马拉母婴对中，人乳微生物种类与哺乳期早期和晚期婴儿的头围相关。
Front Microbiol. 2022 Nov 16;13:908845. doi: 10.3389/fmicb.2022.908845. eCollection 2022.
8
Dietary Acid Alters the Gut Microbiome and Blood Metabolites in Experimental Models.饮食酸会改变实验模型中的肠道微生物组和血液代谢物。
Nutrients. 2022 Feb 15;14(4):814. doi: 10.3390/nu14040814.
本文引用的文献
1
Intestinal serotonin and fluoxetine exposure modulate bacterial colonization in the gut.肠道血清素和氟西汀暴露会调节肠道中的细菌定植。
Nat Microbiol. 2019 Dec;4(12):2064-2073. doi: 10.1038/s41564-019-0540-4. Epub 2019 Sep 2.
2
Type 1 diabetes induces cognitive dysfunction in rats associated with alterations of the gut microbiome and metabolomes in serum and hippocampus.1 型糖尿病可引起大鼠认知功能障碍，与血清和海马肠道微生物组和代谢组的改变有关。
Biochim Biophys Acta Mol Basis Dis. 2019 Dec 1;1865(12):165541. doi: 10.1016/j.bbadis.2019.165541. Epub 2019 Aug 28.
3
Genetic determinants of gut microbiota composition and bile acid profiles in mice.肠道微生物组成和胆汁酸谱的遗传决定因素在小鼠中。
PLoS Genet. 2019 Aug 29;15(8):e1008073. doi: 10.1371/journal.pgen.1008073. eCollection 2019 Aug.
4
Performance of neural network basecalling tools for Oxford Nanopore sequencing.基于神经网络的牛津纳米孔测序碱基调用工具的性能。
Genome Biol. 2019 Jun 24;20(1):129. doi: 10.1186/s13059-019-1727-y.
5
In-feed bacitracin methylene disalicylate modulates the turkey microbiota and metabolome in a dose-dependent manner.饲粮中添加杆菌肽甲叉二水杨酸钠以剂量依赖的方式调节火鸡的微生物组和代谢组。
Sci Rep. 2019 Jun 3;9(1):8212. doi: 10.1038/s41598-019-44338-5.
6
On-farm broiler chicken welfare assessment using transect sampling reflects environmental inputs and production outcomes.采用横切抽样法对农场肉鸡福利进行评估可反映环境投入和生产结果。
PLoS One. 2019 Apr 17;14(4):e0214070. doi: 10.1371/journal.pone.0214070. eCollection 2019.
7
Effect of antibiotic withdrawal in feed on chicken gut microbial dynamics, immunity, growth performance and prevalence of foodborne pathogens.饲料中停用抗生素对鸡肠道微生物动态、免疫力、生长性能及食源性病原体流行率的影响。
PLoS One. 2018 Feb 14;13(2):e0192450. doi: 10.1371/journal.pone.0192450. eCollection 2018.
8
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
9
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
10
Genetic Determinants of the Gut Microbiome in UK Twins.英国双胞胎肠道微生物群的遗传决定因素
Cell Host Microbe. 2016 May 11;19(5):731-43. doi: 10.1016/j.chom.2016.04.017.
Zotero 插件