• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

鉴定和表征来源于胰岛素基因的环形内含子 RNA

Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene.

机构信息

Institute of Life Sciences (ILS), Nalco Square, Bhubaneswar, Odisha 751023, India.

School of Biotechnology, KIIT University, Bhubaneswar, Odisha 751024, India.

出版信息

Int J Mol Sci. 2020 Jun 17;21(12):4302. doi: 10.3390/ijms21124302.

DOI:10.3390/ijms21124302
PMID:32560282
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7352490/
Abstract

Circular RNAs (circRNAs) are a large family of noncoding RNAs that have emerged as novel regulators of gene expression. However, little is known about the function of circRNAs in pancreatic β-cells. Here, transcriptomic analysis of mice pancreatic islet RNA-sequencing data identified 77 differentially expressed circRNAs between mice fed with a normal diet and a high-fat diet. Surprisingly, multiple circRNAs were derived from the intron 2 of the preproinsulin 2 () gene and are termed as circular intronic (). The expression of transcripts in mouse pancreatic islets, and βTC6 cells were confirmed by reverse transcription PCR, DNA sequencing, and RNase R treatment experiments. The level of was altered in βTC6 cells upon exposure to elevated levels of palmitate and glucose. Computational analysis predicted the interaction of several RNA-binding proteins with and their flanking region, suggesting their role in the function or biogenesis. Additionally, bioinformatics analysis predicted the association of several microRNAs with . Gene ontology and pathway analysis of genes targeted by miRNAs associated with suggested the regulation of several key biological processes. Together, our findings indicate that differential expression of circRNAs, especially transcripts, may regulate β-cell function and may play a critical role in the development of diabetes.

摘要

环状 RNA(circRNAs)是一类大型的非编码 RNA 家族,它们作为基因表达的新型调控因子而出现。然而,关于 circRNAs 在胰腺β细胞中的功能知之甚少。在这里,对小鼠胰岛 RNA 测序数据的转录组分析鉴定出正常饮食和高脂肪饮食喂养的小鼠之间有 77 个差异表达的 circRNAs。令人惊讶的是,多个 circRNAs 来源于前胰岛素 2 基因()的内含子 2,被称为环状内含子()。通过逆转录 PCR、DNA 测序和 RNase R 处理实验,证实了在小鼠胰岛和βTC6 细胞中转录物的表达。在βTC6 细胞中,当暴露于高浓度棕榈酸和葡萄糖时,的水平发生改变。计算分析预测了几种 RNA 结合蛋白与和它们的侧翼区域的相互作用,表明它们在的功能或生物发生中发挥作用。此外,生物信息学分析预测了几种 microRNAs 与的关联。与相关联的 microRNAs 靶向的基因的基因本体论和途径分析表明,它们可以调节几个关键的生物学过程。总之,我们的研究结果表明,circRNAs 的差异表达,特别是转录物的表达,可能调节β细胞的功能,并可能在糖尿病的发生中发挥关键作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/42b62b71ffcd/ijms-21-04302-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/44a671121fea/ijms-21-04302-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/aa34d9a9af8f/ijms-21-04302-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/eacd04525ed4/ijms-21-04302-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/f76b5f2cf9f3/ijms-21-04302-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/dcf5e6cdde0a/ijms-21-04302-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/4b9717895ea9/ijms-21-04302-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/42b62b71ffcd/ijms-21-04302-g007.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/44a671121fea/ijms-21-04302-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/aa34d9a9af8f/ijms-21-04302-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/eacd04525ed4/ijms-21-04302-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/f76b5f2cf9f3/ijms-21-04302-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/dcf5e6cdde0a/ijms-21-04302-g005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/4b9717895ea9/ijms-21-04302-g006.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/017b/7352490/42b62b71ffcd/ijms-21-04302-g007.jpg

相似文献

1
Identification and Characterization of Circular Intronic RNAs Derived from Insulin Gene.鉴定和表征来源于胰岛素基因的环形内含子 RNA
Int J Mol Sci. 2020 Jun 17;21(12):4302. doi: 10.3390/ijms21124302.
2
Analysis of pig transcriptomes suggests a global regulation mechanism enabling temporary bursts of circular RNAs.猪转录组分析提示了一个能够实现环状 RNA 短暂爆发的全局调控机制。
RNA Biol. 2019 Sep;16(9):1190-1204. doi: 10.1080/15476286.2019.1621621. Epub 2019 Jun 3.
3
Identification and characterization of circular RNAs in Ganoderma lucidum.鉴定和分析灵芝中的环状 RNA。
Sci Rep. 2019 Nov 11;9(1):16522. doi: 10.1038/s41598-019-52932-w.
4
Identification of Circular RNAs Regulating Islet -Cell Autophagy in Type 2 Diabetes Mellitus.鉴定 2 型糖尿病中调节胰岛细胞自噬的环状 RNA。
Biomed Res Int. 2019 Nov 7;2019:4128315. doi: 10.1155/2019/4128315. eCollection 2019.
5
In-Depth Analysis Reveals Production of Circular RNAs from Non-Coding Sequences.深入分析揭示了非编码序列产生环状 RNA。
Cells. 2020 Jul 30;9(8):1806. doi: 10.3390/cells9081806.
6
Insights into the biogenesis and potential functions of exonic circular RNA.外显子环状 RNA 的生物发生和潜在功能研究进展。
Sci Rep. 2019 Feb 14;9(1):2048. doi: 10.1038/s41598-018-37037-0.
7
Identification and characterization of circular RNAs during the sea buckthorn fruit development.沙棘果实发育过程中环状 RNA 的鉴定与特征分析。
RNA Biol. 2019 Mar;16(3):354-361. doi: 10.1080/15476286.2019.1574162. Epub 2019 Jan 29.
8
Circular RNAs as Novel Regulators of β-Cell Functions under Physiological and Pathological Conditions.环状 RNA 作为生理和病理条件下β细胞功能的新型调节因子。
Int J Mol Sci. 2021 Feb 3;22(4):1503. doi: 10.3390/ijms22041503.
9
circMeta: a unified computational framework for genomic feature annotation and differential expression analysis of circular RNAs.circMeta:一个用于环状 RNA 基因组特征注释和差异表达分析的统一计算框架。
Bioinformatics. 2020 Jan 15;36(2):539-545. doi: 10.1093/bioinformatics/btz606.
10
Transcriptomic Profiling of Circular RNA in Different Brain Regions of Parkinson's Disease in a Mouse Model.帕金森病小鼠模型不同脑区环状RNA的转录组分析
Int J Mol Sci. 2020 Apr 24;21(8):3006. doi: 10.3390/ijms21083006.

引用本文的文献

1
Circular RNAs in human diseases.人类疾病中的环状RNA
MedComm (2020). 2024 Sep 4;5(9):e699. doi: 10.1002/mco2.699. eCollection 2024 Sep.
2
Assessment of different enrichment methods revealed the optimal approach to identify bovine circRnas.不同富集方法的评估揭示了鉴定牛环状 RNA 的最佳方法。
RNA Biol. 2024 Jan;21(1):1-13. doi: 10.1080/15476286.2024.2356334. Epub 2024 May 26.
3
Circular RNAs in diabetes and its complications: Current knowledge and future prospects.糖尿病及其并发症中的环状RNA:当前认知与未来展望。

本文引用的文献

1
CircAtlas: an integrated resource of one million highly accurate circular RNAs from 1070 vertebrate transcriptomes.环状 Atlas:来自 1070 种脊椎动物转录组的 100 万个高度精确的环状 RNA 的综合资源。
Genome Biol. 2020 Apr 28;21(1):101. doi: 10.1186/s13059-020-02018-y.
2
Circular RNAs in Cancer: Biogenesis, Function, and Clinical Significance.环状 RNA 在癌症中的作用:生物发生、功能和临床意义。
Trends Cancer. 2020 Apr;6(4):319-336. doi: 10.1016/j.trecan.2020.01.012. Epub 2020 Feb 19.
3
Closing the circle: current state and perspectives of circular RNA databases.
Front Genet. 2022 Oct 26;13:1006307. doi: 10.3389/fgene.2022.1006307. eCollection 2022.
4
Pro-Inflammatory Cytokines Promote the Transcription of Circular RNAs in Human Pancreatic β Cells.促炎细胞因子促进人胰腺β细胞中环状RNA的转录。
Noncoding RNA. 2022 Oct 12;8(5):69. doi: 10.3390/ncrna8050069.
5
PanCircBase: An online resource for the exploration of circular RNAs in pancreatic islets.泛环状RNA数据库:一个用于探索胰岛中环状RNA的在线资源。
Front Cell Dev Biol. 2022 Aug 19;10:942762. doi: 10.3389/fcell.2022.942762. eCollection 2022.
6
Emerging Role of Circular RNA-Protein Interactions.环状RNA-蛋白质相互作用的新作用
Noncoding RNA. 2021 Aug 4;7(3):48. doi: 10.3390/ncrna7030048.
7
Comparative Analysis of the Circular Transcriptome in Muscle, Liver, and Testis in Three Livestock Species.三种家畜肌肉、肝脏和睾丸中环状转录组的比较分析
Front Genet. 2021 May 10;12:665153. doi: 10.3389/fgene.2021.665153. eCollection 2021.
8
CircRNA May Not Be "Circular".环状RNA可能并非“环状”。
Front Genet. 2021 Feb 19;12:633750. doi: 10.3389/fgene.2021.633750. eCollection 2021.
9
Circular RNAs as Novel Regulators of β-Cell Functions under Physiological and Pathological Conditions.环状 RNA 作为生理和病理条件下β细胞功能的新型调节因子。
Int J Mol Sci. 2021 Feb 3;22(4):1503. doi: 10.3390/ijms22041503.
10
Beyond Back Splicing, a Still Poorly Explored World: Non-Canonical Circular RNAs.超越反式剪接,一个仍未被充分探索的世界:非经典环状 RNA。
Genes (Basel). 2020 Sep 22;11(9):1111. doi: 10.3390/genes11091111.
闭环:环状 RNA 数据库的现状与展望。
Brief Bioinform. 2021 Jan 18;22(1):288-297. doi: 10.1093/bib/bbz175.
4
Circular RNAs-The Road Less Traveled.环状RNA——鲜有人走的路。
Front Mol Biosci. 2020 Jan 10;6:146. doi: 10.3389/fmolb.2019.00146. eCollection 2019.
5
circSamd4 represses myogenic transcriptional activity of PUR proteins.circSamd4 抑制 PUR 蛋白的肌生成转录活性。
Nucleic Acids Res. 2020 Apr 17;48(7):3789-3805. doi: 10.1093/nar/gkaa035.
6
miRTarBase 2020: updates to the experimentally validated microRNA-target interaction database.miRTarBase 2020:实验验证的 microRNA-靶标相互作用数据库更新。
Nucleic Acids Res. 2020 Jan 8;48(D1):D148-D154. doi: 10.1093/nar/gkz896.
7
miRDB: an online database for prediction of functional microRNA targets.miRDB:一个用于预测功能 microRNA 靶标的在线数据库。
Nucleic Acids Res. 2020 Jan 8;48(D1):D127-D131. doi: 10.1093/nar/gkz757.
8
TDP-43 regulates early-phase insulin secretion via CaV1.2-mediated exocytosis in islets.TDP-43 通过胰岛中 CaV1.2 介导的胞吐作用调节早期胰岛素分泌。
J Clin Invest. 2019 Jul 29;129(9):3578-3593. doi: 10.1172/JCI124481.
9
[Diabetes mellitus-Definition, classification, diagnosis, screening and prevention (Update 2019)].[糖尿病——定义、分类、诊断、筛查及预防(2019年更新)]
Wien Klin Wochenschr. 2019 May;131(Suppl 1):6-15. doi: 10.1007/s00508-019-1450-4.
10
Circular RNAs in myogenesis.环状 RNA 在成肌中的作用。
Biochim Biophys Acta Gene Regul Mech. 2020 Apr;1863(4):194372. doi: 10.1016/j.bbagrm.2019.02.011. Epub 2019 Apr 1.