Institute of Life Sciences (ILS), Nalco Square, Bhubaneswar, Odisha 751023, India.
School of Biotechnology, KIIT University, Bhubaneswar, Odisha 751024, India.
Int J Mol Sci. 2020 Jun 17;21(12):4302. doi: 10.3390/ijms21124302.
Circular RNAs (circRNAs) are a large family of noncoding RNAs that have emerged as novel regulators of gene expression. However, little is known about the function of circRNAs in pancreatic β-cells. Here, transcriptomic analysis of mice pancreatic islet RNA-sequencing data identified 77 differentially expressed circRNAs between mice fed with a normal diet and a high-fat diet. Surprisingly, multiple circRNAs were derived from the intron 2 of the preproinsulin 2 () gene and are termed as circular intronic (). The expression of transcripts in mouse pancreatic islets, and βTC6 cells were confirmed by reverse transcription PCR, DNA sequencing, and RNase R treatment experiments. The level of was altered in βTC6 cells upon exposure to elevated levels of palmitate and glucose. Computational analysis predicted the interaction of several RNA-binding proteins with and their flanking region, suggesting their role in the function or biogenesis. Additionally, bioinformatics analysis predicted the association of several microRNAs with . Gene ontology and pathway analysis of genes targeted by miRNAs associated with suggested the regulation of several key biological processes. Together, our findings indicate that differential expression of circRNAs, especially transcripts, may regulate β-cell function and may play a critical role in the development of diabetes.
环状 RNA(circRNAs)是一类大型的非编码 RNA 家族,它们作为基因表达的新型调控因子而出现。然而,关于 circRNAs 在胰腺β细胞中的功能知之甚少。在这里,对小鼠胰岛 RNA 测序数据的转录组分析鉴定出正常饮食和高脂肪饮食喂养的小鼠之间有 77 个差异表达的 circRNAs。令人惊讶的是,多个 circRNAs 来源于前胰岛素 2 基因()的内含子 2,被称为环状内含子()。通过逆转录 PCR、DNA 测序和 RNase R 处理实验,证实了在小鼠胰岛和βTC6 细胞中转录物的表达。在βTC6 细胞中,当暴露于高浓度棕榈酸和葡萄糖时,的水平发生改变。计算分析预测了几种 RNA 结合蛋白与和它们的侧翼区域的相互作用,表明它们在的功能或生物发生中发挥作用。此外,生物信息学分析预测了几种 microRNAs 与的关联。与相关联的 microRNAs 靶向的基因的基因本体论和途径分析表明,它们可以调节几个关键的生物学过程。总之,我们的研究结果表明,circRNAs 的差异表达,特别是转录物的表达,可能调节β细胞的功能,并可能在糖尿病的发生中发挥关键作用。