Department of Chemical Engineering, Biotechnology and Environmental Technology, University of Southern Denmark, Campusvej 55, 5230, Odense, Denmark.
BMC Evol Biol. 2020 Jun 23;20(1):73. doi: 10.1186/s12862-020-01634-3.
Small leucine-rich repeat protein (SLRP) family members contain conserved leucine-rich repeat motifs flanked by highly variable N- and C-terminal regions. Most class II and III SLRPs have tyrosine-rich N-terminal regions and some of these are sulfated. However, the evolutionary origin and conservation of the tyrosine-rich and acidic terminal regions remain undetermined. In this study, we present the most comprehensive multiple sequence alignment (MSA) analyses of all eight class II and III SLRPs to date. Based on the level of conservation of tyrosine residues and adjacent sequences, we predict which tyrosine residues are most likely to be sulfated in the terminal regions of human class II and III SLRPs.
Using this novel approach, we predict a total of 22 tyrosine sulfation sites in human SLRPs, of which only 8 sites had been experimentally identified in mammals. Our analyses suggest that sulfation-prone, tyrosine-rich and acidic terminal regions of the class II and III SLRPs emerged via convergent evolution at different stages of vertebrate evolution, coinciding with significant evolutionary events including the development of endochondral bones and articular cartilage, the aquatic to terrestrial transition, and the formation of an amnion.
Our study suggests that selective pressures due to changes in life conditions led to the formation of sulfotyrosine-rich and acidic terminal regions. We believe the independent emergence and evolution of sulfotyrosine-rich and acidic N- and C-terminal regions have provided each class II and III SLRP member with novel vital functions required to develop new specialized extracellular matrices and tissues in vertebrate species.
富含亮氨酸的小蛋白聚糖 (SLRP) 家族成员含有保守的亮氨酸丰富重复基序,两侧是高度可变的 N-和 C-末端区域。大多数 II 类和 III 类 SLRPs 具有富含酪氨酸的 N-末端区域,其中一些区域被硫酸化。然而,富含酪氨酸和酸性末端区域的进化起源和保守性仍未确定。在这项研究中,我们展示了迄今为止对所有 8 种 II 类和 III 类 SLRPs 的最全面的多重序列比对 (MSA) 分析。基于酪氨酸残基和相邻序列的保守程度,我们预测了人类 II 类和 III 类 SLRPs 末端区域中最有可能被硫酸化的酪氨酸残基。
使用这种新方法,我们总共预测了人类 SLRPs 中的 22 个酪氨酸硫酸化位点,其中只有 8 个位点在哺乳动物中得到了实验鉴定。我们的分析表明,富含酪氨酸和酸性的 II 类和 III 类 SLRPs 末端区域通过脊椎动物进化的不同阶段的趋同进化而出现,这与重大进化事件相吻合,包括软骨内骨和关节软骨的发育、水生到陆生的过渡以及羊膜的形成。
我们的研究表明,由于生活条件的变化而产生的选择压力导致了富含硫酸酪氨酸和酸性末端区域的形成。我们认为,富含硫酸酪氨酸和酸性 N-和 C-末端区域的独立出现和进化为每一种 II 类和 III 类 SLRP 成员提供了新的重要功能,这些功能对于在脊椎动物物种中开发新的专门的细胞外基质和组织是必需的。