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从有机小麦根际分离的sp.菌株SK的全基因组序列

Complete Genome Sequence of sp. Strain SK, Isolated from Organic Wheat Rhizosphere.

作者信息

Khatri Shivani, Sazinas Pavelas, Shivay Yashbir S, Sharma Shilpi, Jelsbak Lars

机构信息

Department of Biochemical Engineering and Biotechnology, Indian Institute of Technology Delhi, Hauz Khas, New Delhi, India.

Department of Biotechnology and Biomedicine, Technical University of Denmark, Kongens Lyngby, Denmark.

出版信息

Microbiol Resour Announc. 2020 Jun 25;9(26):e00510-20. doi: 10.1128/MRA.00510-20.

DOI:10.1128/MRA.00510-20
PMID:32586866
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7317103/
Abstract

Here, we report the annotated whole-genome sequence of sp. strain SK, isolated in India from organic wheat rhizosphere. This strain has proved to be a species with potential biocontrol activity against soilborne plant pathogens based on antiSMASH analysis.

摘要

在此，我们报告了从印度有机小麦根际分离出的sp. 菌株SK的全基因组注释序列。基于抗SMASH分析，该菌株已被证明是一种对土传植物病原体具有潜在生物防治活性的物种。

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本文引用的文献

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antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.antiSMASH 5.0：二次代谢产物基因组挖掘管道的更新。
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
2
Unicycler: Resolving bacterial genome assemblies from short and long sequencing reads.单轮循环器：从短读长和长读长测序数据中解析细菌基因组组装结果
PLoS Comput Biol. 2017 Jun 8;13(6):e1005595. doi: 10.1371/journal.pcbi.1005595. eCollection 2017 Jun.
3
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
4
JSpeciesWS: a web server for prokaryotic species circumscription based on pairwise genome comparison.JSpeciesWS：一个基于成对基因组比较进行原核生物物种界定的网络服务器。
Bioinformatics. 2016 Mar 15;32(6):929-31. doi: 10.1093/bioinformatics/btv681. Epub 2015 Nov 16.
5
DNA sequence-based analysis of the Pseudomonas species.基于 DNA 序列的假单胞菌属分析。
Environ Microbiol. 2010 Jun;12(6):1513-30. doi: 10.1111/j.1462-2920.2010.02181.x. Epub 2010 Feb 25.