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美洲桤木色杆菌,从美洲槭树中抽出的树液中分离得到。

Rahnella aceris sp. nov., isolated from sap drawn from Acer pictum.

机构信息

Institute of Jeju Microbial Resources, BioPS Co., Ltd., Jeju, 63243, Republic of Korea.

Faculty of Biotechnology, Jeju National University, Jeju, 63243, Republic of Korea.

出版信息

Arch Microbiol. 2020 Nov;202(9):2411-2417. doi: 10.1007/s00203-020-01961-5. Epub 2020 Jun 26.

Abstract

A Gram-reaction-negative, facultatively anaerobic bacterium, designated SAP-19, was isolated from sap extracted from Acer pictum in Mt. Halla in Jeju, Republic of Korea and its taxonomic statue was investigated by a polyphasic approach including genome- and 16S rRNA gene-based phylogenetic analyses. Cells were motile, short rods and showed growth at 20-30 °C, pH 4-9 and 0-6% (w/v) NaCl. The whole genome- and 16S rRNA gene-based phylogenetic analyses exhibited that strain SAP-19 belongs to the genus Rahnella and forms a tight cluster with Rahnella aquatilis. The isolate shared average nucleotide identity of 92.7% and 16S rRNA gene sequence similarity of 99.6% with the type strain of Rahnella aquatilis. The polar lipids contained phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified lipid. The major isoprenoid quinone was Q-8. The predominant fatty acids were C and Ccyclo. The G + C content of the genome was 52.3%. The low average nucleotide identity (92.7%) and digital DNA relatedness (48.6%) values between the isolate and the most closely related strain showed that the isolate can be considered a different genospecies. On the basis of combined data obtained in this study, strain SAP-19 (= KACC 21744 = NBRC 114407) represents a novel species of the genus Rahnella, for which the name Rahnella aceris sp. nov. is proposed.

摘要

一株革兰氏反应阴性、兼性厌氧细菌,被命名为 SAP-19,从韩国济州岛汉拿山的 Acer pictum 提取的树液中分离得到,并通过基于基因组和 16S rRNA 基因的系统发育分析等多相方法研究了其分类地位。细胞为运动性短杆菌,在 20-30°C、pH4-9 和 0-6%(w/v)NaCl 下生长。基于全基因组和 16S rRNA 基因的系统发育分析表明,菌株 SAP-19 属于 Rahnella 属,与 Rahnella aquatilis 形成紧密聚类。该分离株与 Rahnella aquatilis 的模式株具有 92.7%的平均核苷酸同一性和 99.6%的 16S rRNA 基因序列相似性。极性脂含有磷脂酰乙醇胺、一种未鉴定的氨基磷脂和一种未鉴定的脂。主要的异戊二烯醌为 Q-8。主要脂肪酸为 C 和 Ccyclo。基因组的 G+C 含量为 52.3%。该分离株与最密切相关的菌株之间的平均核苷酸同一性(92.7%)和数字 DNA 相关性(48.6%)值较低,表明该分离株可以被认为是一个不同的种。基于本研究获得的综合数据,菌株 SAP-19(=KACC 21744=NBRC 114407)代表了 Rahnella 属的一个新种,现提议将其命名为 Aceris 栖 Rahnella 新种。

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