Institute of Jeju Microbial Resources, BioPS Co., Ltd., Jeju, 63243, Republic of Korea.
Faculty of Biotechnology, Jeju National University, Jeju, 63243, Republic of Korea.
Arch Microbiol. 2020 Nov;202(9):2411-2417. doi: 10.1007/s00203-020-01961-5. Epub 2020 Jun 26.
A Gram-reaction-negative, facultatively anaerobic bacterium, designated SAP-19, was isolated from sap extracted from Acer pictum in Mt. Halla in Jeju, Republic of Korea and its taxonomic statue was investigated by a polyphasic approach including genome- and 16S rRNA gene-based phylogenetic analyses. Cells were motile, short rods and showed growth at 20-30 °C, pH 4-9 and 0-6% (w/v) NaCl. The whole genome- and 16S rRNA gene-based phylogenetic analyses exhibited that strain SAP-19 belongs to the genus Rahnella and forms a tight cluster with Rahnella aquatilis. The isolate shared average nucleotide identity of 92.7% and 16S rRNA gene sequence similarity of 99.6% with the type strain of Rahnella aquatilis. The polar lipids contained phosphatidylethanolamine, an unidentified aminophospholipid and an unidentified lipid. The major isoprenoid quinone was Q-8. The predominant fatty acids were C and Ccyclo. The G + C content of the genome was 52.3%. The low average nucleotide identity (92.7%) and digital DNA relatedness (48.6%) values between the isolate and the most closely related strain showed that the isolate can be considered a different genospecies. On the basis of combined data obtained in this study, strain SAP-19 (= KACC 21744 = NBRC 114407) represents a novel species of the genus Rahnella, for which the name Rahnella aceris sp. nov. is proposed.
一株革兰氏反应阴性、兼性厌氧细菌,被命名为 SAP-19,从韩国济州岛汉拿山的 Acer pictum 提取的树液中分离得到,并通过基于基因组和 16S rRNA 基因的系统发育分析等多相方法研究了其分类地位。细胞为运动性短杆菌,在 20-30°C、pH4-9 和 0-6%(w/v)NaCl 下生长。基于全基因组和 16S rRNA 基因的系统发育分析表明,菌株 SAP-19 属于 Rahnella 属,与 Rahnella aquatilis 形成紧密聚类。该分离株与 Rahnella aquatilis 的模式株具有 92.7%的平均核苷酸同一性和 99.6%的 16S rRNA 基因序列相似性。极性脂含有磷脂酰乙醇胺、一种未鉴定的氨基磷脂和一种未鉴定的脂。主要的异戊二烯醌为 Q-8。主要脂肪酸为 C 和 Ccyclo。基因组的 G+C 含量为 52.3%。该分离株与最密切相关的菌株之间的平均核苷酸同一性(92.7%)和数字 DNA 相关性(48.6%)值较低,表明该分离株可以被认为是一个不同的种。基于本研究获得的综合数据,菌株 SAP-19(=KACC 21744=NBRC 114407)代表了 Rahnella 属的一个新种,现提议将其命名为 Aceris 栖 Rahnella 新种。