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丙泊酚和芬太尼在磷脂酰胆碱脂质双层中的原子分子动力学模拟

Atomistic Molecular Dynamics Simulations of Propofol and Fentanyl in Phosphatidylcholine Lipid Bilayers.

作者信息

Faulkner Christopher, Santos-Carballal David, Plant David F, de Leeuw Nora H

机构信息

School of Chemistry, Cardiff University, Main Building, Park Place, CF10 3AT Cardiff, U.K.

School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K.

出版信息

ACS Omega. 2020 Jun 12;5(24):14340-14353. doi: 10.1021/acsomega.0c00813. eCollection 2020 Jun 23.

Abstract

Atomistic molecular dynamics (MD) and steered MD simulations in combination with umbrella sampling methodology were utilized to study the general anesthetic propofol and the opioid analgesic fentanyl and their interaction with lipid bilayers, which is not yet fully understood. These molecules were inserted into two different fully hydrated phospholipid bilayers, namely, dioleoylphosphatidylcholine (DOPC) and dipalmitoylphosphatidylcholine (DPPC), to investigate the effects that these drugs have on the bilayer. We determined the role of the lipid chain length and saturation on the behavior of the two drugs. Pure, fully hydrated DOPC and DPPC bilayers were also simulated, and the results were in excellent agreement with the experimental values. Various structural and mechanical properties of each system, such as the area per lipid, area compressibility modulus, order parameter, lateral lipid diffusion, hydrogen bonds, and radial distribution functions, have been calculated to assess how the drug molecules affect the different bilayers. From the calculated results, we show that fentanyl and propofol generally follow similar trends in each bilayer but adopt different favorable positions close to the headgroup/chain interface at the carbonyl groups. Propofol was shown to selectively form hydrogen bonds at the carbonyl carbon in each bilayer, whereas fentanyl interacts with water molecules at the headgroup interface. From the calculated free-energy profiles, we determined that both molecules show a preference for the low-density, low-order acyl chain region of the bilayers and both significantly preferred the DOPC bilayer with propofol and fentanyl having energy minima at -6.66 and -43.07 kcal mol, respectively. This study suggests that different chain lengths and levels of saturation directly affect the properties of these two important molecules, which are seen to work together to control anesthesia in surgical applications.

摘要

采用原子分子动力学(MD)和引导分子动力学模拟,并结合伞形抽样方法,研究了全身麻醉药丙泊酚和阿片类镇痛药芬太尼及其与脂质双层的相互作用,目前对这种相互作用尚未完全了解。将这些分子插入两种不同的完全水合磷脂双层中,即二油酰磷脂酰胆碱(DOPC)和二棕榈酰磷脂酰胆碱(DPPC),以研究这些药物对双层的影响。我们确定了脂质链长度和饱和度对这两种药物行为的作用。还模拟了纯的、完全水合的DOPC和DPPC双层,结果与实验值非常吻合。计算了每个系统的各种结构和力学性质,如每个脂质的面积、面积压缩模量、序参数、横向脂质扩散、氢键和径向分布函数,以评估药物分子如何影响不同的双层。从计算结果来看,我们表明芬太尼和丙泊酚在每个双层中总体上遵循相似的趋势,但在羰基处靠近头基/链界面采用不同的有利位置。结果表明,丙泊酚在每个双层的羰基碳处选择性地形成氢键,而芬太尼在头基界面与水分子相互作用。从计算出的自由能分布来看,我们确定这两种分子都倾向于双层的低密度、低序酰基链区域,并且都显著偏好DOPC双层,丙泊酚和芬太尼的能量最小值分别为-6.66和-43.07 kcal/mol。这项研究表明,不同的链长度和饱和度水平直接影响这两种重要分子的性质,在外科手术应用中,它们共同作用来控制麻醉。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/aa07/7315410/8b09d1ee78e1/ao0c00813_0001.jpg

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