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来自南极嗜冷菌TAE123的一种热稳定醇脱氢酶的结构与动力学

Structure and Dynamics of a Thermostable Alcohol Dehydrogenase from the Antarctic Psychrophile sp. TAE123.

作者信息

Petratos Kyriacos, Gessmann Renate, Daskalakis Vangelis, Papadovasilaki Maria, Papanikolau Yannis, Tsigos Iason, Bouriotis Vassilis

机构信息

Institute of Molecular Biology and Biotechnology, Foundation for Research and Technology-Hellas, 70013 Heraklion, Greece.

Department of Chemical Engineering, Cyprus University of Technology, 3603 Limassol, Cyprus.

出版信息

ACS Omega. 2020 Jun 8;5(24):14523-14534. doi: 10.1021/acsomega.0c01210. eCollection 2020 Jun 23.

Abstract

The structure of a recombinant (His-tagged at C-terminus) alcohol dehydrogenase (ADH) from the cold-adapted bacterium sp. TAE123 has been refined with X-ray diffraction data extending to 1.9 Å resolution. The enzyme assumes a homo-tetrameric structure. Each subunit comprises two distinct structural domains: the catalytic domain (residues 1-150 and 288-340/345) and the nucleotide-binding domain (residues 151-287). There are two Zn ions in each protein subunit. Two additional zinc ions have been found in the crystal structure between symmetry-related subunits. The structure has been compared with those of homologous enzymes from (ADH), (ADH), and sp. ATN1 (ADH) that thrive in environments of diverse temperatures. Unexpectedly, ADH has been found active from 10 to at least 53 °C and unfolds at 89 °C according to circular dichroism spectropolarimetry data. ADH with substrate ethanol exhibits a small value of activation enthalpy Δ of 30 kJ mol. Molecular dynamics simulations for single subunits of the closely homologous enzymes ADH and ADH performed at 280, 310, and 340 K showed enhanced wide-ranging mobility of ADH at high temperatures and generally lower but more distinct and localized mobility for ADH. Principal component analysis of the fluctuations of both ADHs resulted in a prominent open-close transition of the structural domains mainly at 280 K for ADH and 340 K for ADH. In conclusion, ADH is a very thermostable, cold-adapted enzyme and the small value of activation enthalpy allows the enzyme to function adequately at low temperatures.

摘要

来自嗜冷细菌TAE123的重组(C端带有His标签)乙醇脱氢酶(ADH)的结构已通过分辨率达1.9 Å的X射线衍射数据进行了优化。该酶呈同四聚体结构。每个亚基包含两个不同的结构域:催化结构域(残基1 - 150和288 - 340/345)和核苷酸结合结构域(残基151 - 287)。每个蛋白质亚基中有两个锌离子。在对称相关亚基之间的晶体结构中还发现了另外两个锌离子。已将该结构与来自不同温度环境中生存的嗜温细菌(ADH)、嗜热细菌(ADH)和嗜冷细菌sp. ATN1(ADH)的同源酶结构进行了比较。出乎意料的是,根据圆二色光谱偏振数据,ADH在10至至少53 °C具有活性,在89 °C时展开。与底物乙醇结合的ADH的活化焓Δ 较小,为30 kJ/mol。在280、310和340 K下对密切同源的酶ADH和ADH的单个亚基进行的分子动力学模拟表明,ADH在高温下具有增强的广泛流动性,而ADH的流动性通常较低但更明显且局限。对两种ADH波动的主成分分析导致结构域主要在280 K(对于ADH)和340 K(对于ADH)发生显著的开闭转变。总之,ADH是一种非常耐热、适应低温的酶,活化焓较小使得该酶能够在低温下充分发挥作用。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/b279/7315583/67b302d54462/ao0c01210_0001.jpg

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