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糖苷水解酶家族 GH1 β-葡萄糖苷酶的同源二聚化表明不同状态的酶具有独特的活性。

Homodimerization of a glycoside hydrolase family GH1 β-glucosidase suggests distinct activity of enzyme different states.

机构信息

Departamento de Bioquímica, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.

出版信息

Protein Sci. 2020 Sep;29(9):1879-1889. doi: 10.1002/pro.3908. Epub 2020 Jul 13.

DOI:10.1002/pro.3908
PMID:32597558
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7454524/
Abstract

In this work, we investigated how activity and oligomeric state are related in a purified GH1 β-glucosidase from Spodoptera frugiperda (Sfβgly). Gel filtration chromatography coupled to a multiple angle light scattering detector allowed separation of the homodimer and monomer states and determination of the dimer dissociation constant (K ), which was in the micromolar range. Enzyme kinetic parameters showed that the dimer is on average 2.5-fold more active. Later, we evaluated the kinetics of homodimerization, scanning the changes in the Sfβgly intrinsic fluorescence over time when the dimer dissociates into the monomer after a large dilution. We described how the rate constant of monomerization (k ) is affected by temperature, revealing the enthalpic and entropic contributions to the process. We also evaluated how the rate constant (k ) by which equilibrium is reached after dimer dilution behaves when varying the initial Sfβgly concentration. These data indicated that Sfβgly dimerizes through the conformational selection mechanism, in which the monomer undergoes a conformational exchange and then binds to a similar monomer, forming a more active homodimer. Finally, we noted that conformational selection reports and experiments usually rely on a ligand whose concentration is in excess, but for homodimerization, this approach does not hold. Hence, since our approach overcomes this limitation, this study not only is a new contribution to the comprehension of GH1 β-glucosidases, but it can also help to elucidate protein interaction pathways.

摘要

在这项工作中,我们研究了纯化的来自 Spodoptera frugiperda( Sfβgly)的 GH1β-葡萄糖苷酶中活性和寡聚状态之间的关系。凝胶过滤色谱法与多角度光散射检测器相结合,允许分离同源二聚体和单体状态,并确定二聚体解离常数( K),其范围在微摩尔级。酶动力学参数表明,二聚体的平均活性高 2.5 倍。后来,我们评估了同源二聚化的动力学,通过扫描 Sfβgly 固有荧光随时间的变化来评估二聚体在大稀释后解离为单体时的变化。我们描述了单体化的速率常数( k)如何受到温度的影响,揭示了该过程的焓和熵贡献。我们还评估了当初始 Sfβgly 浓度变化时,达到平衡后二聚体稀释的速率常数( k)的行为。这些数据表明 Sfβgly 通过构象选择机制二聚化,其中单体经历构象交换,然后与类似的单体结合,形成更活跃的同源二聚体。最后,我们注意到构象选择报告和实验通常依赖于浓度过剩的配体,但对于同源二聚化,这种方法并不适用。因此,由于我们的方法克服了这一限制,这项研究不仅是对 GH1β-葡萄糖苷酶理解的新贡献,而且还有助于阐明蛋白质相互作用途径。

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Characterization of homodimer interfaces with cross-linking mass spectrometry and isotopically labeled proteins.用交联质谱法和同位素标记蛋白对同源二聚体界面进行表征。
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The role of dimer asymmetry and protomer dynamics in enzyme catalysis.二聚体不对称和单体动力学在酶催化中的作用。
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