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苯并呋喃羧酸衍生物单体和二聚体的分子对接研究、结构与光谱性质:密度泛函理论计算及生物活性

Molecular docking studies, structural and spectroscopic properties of monomeric and dimeric species of benzofuran-carboxylic acids derivatives: DFT calculations and biological activities.

作者信息

Sagaama Abir, Noureddine Olfa, Brandán Silvia Antonia, Jędryka Anna Jarczyk-, Flakus Henryk T, Ghalla Houcine, Issaoui Noureddine

机构信息

University of Monastir, Laboratory of Quantum and Statistical Physics (LR18ES18), Faculty of Sciences, Monastir, 5079, Tunisia.

Cátedra de Química General, Instituto de Química Inorgánica, Facultad de Bioquímica, Química y Farmacia, Universidad Nacional de Tucumán, Ayacucho 471, 4000, San Miguel de Tucumán, Tucumán, Argentina.

出版信息

Comput Biol Chem. 2020 Jun 20;87:107311. doi: 10.1016/j.compbiolchem.2020.107311.

DOI:10.1016/j.compbiolchem.2020.107311
PMID:32604029
Abstract

Structural optimization, molecular docking analysis, electronic and vibrational properties have been investigated for the 1-benzofuran-2-carboxylic acid (2BF) and 1-benzofuran-3-carboxylic acid (3BF) using DFT/B3LYP/6-311++G(d,p) level of theory. The theoretical parameters have a very good consistency with the experimental ones. The weak intermolecular interactions were analyzed by different tool such as: Hirshfeld surfaces, topological analysis and natural bond orbital studies. The nonlinear optical properties have been investigated. Molecular electrostatic potential and frontier molecular orbitals (FMOs) analysis have been carried out to understand the reactivity of the molecule. In addition, TD-DFT calculation is initiated to simulate the UV-vis absorption spectrum and to determine several important electronic properties like HOMO-LUMO gap energy and electronic transitions. The complete vibrational assignments and the force constants were reported for monomer and dimers of both acids. The biological activities of the tow acids have been studied via molecular docking analysis. The later calculations prove that the studied acids have an inhibitor effect against cancer and microbial diseases.

摘要

采用密度泛函理论(DFT)/B3LYP/6-311++G(d,p)水平,对1-苯并呋喃-2-羧酸(2BF)和1-苯并呋喃-3-羧酸(3BF)进行了结构优化、分子对接分析、电子和振动性质研究。理论参数与实验参数具有很好的一致性。通过不同工具分析了弱分子间相互作用,如: Hirshfeld表面、拓扑分析和自然键轨道研究。研究了非线性光学性质。进行了分子静电势和前线分子轨道(FMOs)分析,以了解分子的反应活性。此外,启动了含时密度泛函理论(TD-DFT)计算,以模拟紫外可见吸收光谱,并确定几个重要的电子性质,如最高占据分子轨道-最低未占据分子轨道(HOMO-LUMO)能隙和电子跃迁。报道了两种酸单体和二聚体的完整振动归属和力常数。通过分子对接分析研究了两种酸的生物活性。后续计算证明,所研究的酸对癌症和微生物疾病具有抑制作用。

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