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巴西热带稀树草原人群的代谢组学研究揭示了环境因素对其特化代谢的强烈影响。

Metabolomics of Populations in Brazilian Savanna Reveals Strong Influence of Environmental Factors on Its Specialized Metabolism.

机构信息

Faculty of Sciences, São Paulo State University (UNESP), CEP 17033-360, Bauru, São Paulo, Brazil.

School of Pharmaceutical Sciences, Institute of Pharmaceutical Sciences of Western Switzerland, University of Geneva (IPSWS), CH-1211 Geneva 4, Switzerland.

出版信息

Molecules. 2020 Jun 26;25(12):2954. doi: 10.3390/molecules25122954.

Abstract

Environmental conditions influence specialized plant metabolism. However, many studies aiming to understand these modulations have been conducted with model plants and/or under controlled conditions, thus not reflecting the complex interaction between plants and environment. To fully grasp these interactions, we investigated the specialized metabolism and genetic diversity of a native plant in its natural environment. We chose due to its medicinal interest and occurrence in Brazilian savanna regions with diverse climate and soil conditions. An LC-HRMS-based metabolomics approach was applied to analyze 271 samples harvested across seven regions during the dry and rainy season. Genetic diversity was assessed in a subset of 40 samples using amplified fragment length polymorphism. Meteorological factors including rainfall, temperature, radiation, humidity, and soil nutrient and mineral composition were recorded in each region and correlated with chemical variation through multivariate analysis (MVDA). Marker compounds were selected using a statistically informed molecular network and annotated by dereplication against an in silico database of natural products. The integrated results evidenced different chemotypes, with variation in flavonoid and tannin content mainly linked to soil conditions. Different levels of genetic diversity and distance of populations were found to be correlated with the identified chemotypes. These observations and the proposed analytical workflow contribute to the global understanding of the impact of abiotic factors and genotype on the accumulation of given metabolites and, therefore, could be valuable to guide further medicinal exploration of native species.

摘要

环境条件会影响植物的特有代谢。然而,许多旨在了解这些调节作用的研究都是在模式植物和/或受控条件下进行的,因此无法反映植物与环境之间的复杂相互作用。为了全面了解这些相互作用,我们在自然环境中研究了一种本地植物的特有代谢和遗传多样性。我们选择 ,是因为它具有药用价值,并且生长在巴西稀树草原地区,这些地区气候和土壤条件多样。我们采用基于 LC-HRMS 的代谢组学方法,分析了在旱季和雨季采集的 271 个样本。在 40 个样本的子集中,使用扩增片段长度多态性评估了遗传多样性。在每个地区记录了包括降雨量、温度、辐射、湿度以及土壤养分和矿物质组成在内的气象因素,并通过多元分析(MVDA)将其与化学变化相关联。使用统计信息分子网络选择标记化合物,并通过与天然产物的计算机数据库进行去重复来注释。综合结果表明存在不同的化学型,黄酮类和单宁类物质的含量变化主要与土壤条件有关。发现不同水平的遗传多样性和种群间的距离与鉴定出的化学型有关。这些观察结果和提出的分析工作流程有助于全面了解非生物因素和基因型对特定代谢物积累的影响,因此可能对指导对本地物种的进一步药用探索有价值。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/19d6/7356273/096948f8bc27/molecules-25-02954-g003.jpg

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