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加纳健康成年人的粪便微生物组组成。

Fecal Microbiome Composition in Healthy Adults in Ghana.

机构信息

Joint Research Center for Human Retrovirus Infection, Kumamoto University, Japan.

AIDS Research Center, National Institute of Infectious Diseases, Japan.

出版信息

Jpn J Infect Dis. 2021 Jan 22;74(1):42-47. doi: 10.7883/yoken.JJID.2020.469. Epub 2020 Jun 30.

Abstract

Recent studies have indicated an association between gut microbiome composition and various disorders, including infectious diseases. The composition of the microbiome differs among ethnicities and countries, possibly resulting in diversified interactions between host immunity and the gut microbiome. Characterization of baseline microbiome composition in healthy people is an essential step for better understanding of the biological interactions associated with individual populations. However, data on the gut/fecal microbiome have not been accumulated for individuals in West Africa. In the present study, we examined the fecal microbiome composition in healthy adults in Ghana. Toward this, 16S rRNA gene libraries were prepared using bacterial fractions derived from 55 Ghanaian adults, which were then subjected to next-generation sequencing. The fecal microbiome of the Ghanaian adults was dominated by Firmicutes (Faecalibacterium, Subdoligranulum, and Ruminococcaceae UCG-014), Proteobacteria (Escherichia-Shigella and Klebsiella), and Bacteroidetes (Prevotella 9 and Bacteroides), consistent with previous observations in African cohorts. Further, our analysis revealed differences in microbiome composition and a lower diversity of the fecal microbiome in the Ghanaian cohort compared with those reported in non-African countries. This is the first study to describe substantial fecal microbiome data obtained using high-throughput metagenomic tools on samples derived from a cohort in Ghana. The data may provide a valuable basis for determining the association between the fecal microbiome and progression of various diseases in West African populations.

摘要

最近的研究表明,肠道微生物组的组成与各种疾病有关,包括传染病。微生物组的组成在不同种族和国家之间存在差异,可能导致宿主免疫与肠道微生物组之间的相互作用多样化。对健康人群的基线微生物组组成进行特征描述是更好地理解与个体人群相关的生物学相互作用的重要步骤。然而,目前还没有关于西非个体肠道/粪便微生物组的数据。在本研究中,我们检查了加纳健康成年人的粪便微生物组组成。为此,我们使用源自 55 名加纳成年人的细菌部分制备了 16S rRNA 基因文库,然后对其进行下一代测序。加纳成年人的粪便微生物组主要由厚壁菌门(粪杆菌、Subdoligranulum 和 Ruminococcaceae UCG-014)、变形菌门(大肠杆菌-志贺氏菌和克雷伯氏菌)和拟杆菌门(普雷沃氏菌 9 和拟杆菌)组成,与之前在非洲队列中的观察结果一致。此外,我们的分析显示,与非非洲国家报告的结果相比,加纳队列的微生物组组成存在差异,粪便微生物组的多样性较低。这是第一项使用高通量宏基因组工具对来自加纳队列的样本进行描述性粪便微生物组数据的研究。这些数据可能为确定粪便微生物组与西非人群各种疾病进展之间的关联提供有价值的基础。

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