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在自然界中,eDNA 颗粒浓度与生物丰度之间的关系通过异速缩放得到加强。

The relationship between eDNA particle concentration and organism abundance in nature is strengthened by allometric scaling.

机构信息

Université du Québec à Montréal, Montréal, Québec, Canada.

University of Calgary Calgary, Alberta, Canada.

出版信息

Mol Ecol. 2021 Jul;30(13):3068-3082. doi: 10.1111/mec.15543. Epub 2020 Aug 2.

Abstract

Organism abundance is a critical parameter in ecology, but its estimation is often challenging. Approaches utilizing eDNA to indirectly estimate abundance have recently generated substantial interest. However, preliminary correlations observed between eDNA concentration and abundance in nature are typically moderate in strength with significant unexplained variation. Here, we apply a novel approach to integrate allometric scaling coefficients into models of eDNA concentration and organism abundance. We hypothesize that eDNA particle production scales nonlinearly with mass, with scaling coefficients < 1. Wild populations often exhibit substantial variation in individual body size distributions; we therefore predict that the distribution of mass across individuals within a population will influence population-level eDNA production rates. To test our hypothesis, we collected standardized body size distribution and mark-recapture abundance data using whole-lake experiments involving nine populations of brook trout. We correlated eDNA concentration with three metrics of abundance: density (individuals/ha), biomass (kg/ha) and allometrically scaled mass (ASM) (∑(individual mass )/ha). Density and biomass were both significantly positively correlated with eDNA concentration (adj. r  = 0.59 and 0.63, respectively), but ASM exhibited improved model fit (adj. r  = 0.78). We also demonstrate how estimates of ASM derived from eDNA samples in "unknown" systems can be converted to biomass or density estimates with additional size-structure data. Future experiments should empirically validate allometric scaling coefficients for eDNA production, particularly where substantial intraspecific size distribution variation exists. Incorporating allometric scaling may improve predictive models to the extent that eDNA concentration may become a reliable indicator of abundance in nature.

摘要

生物丰度是生态学中的一个关键参数,但它的估计通常具有挑战性。利用环境 DNA 来间接估计丰度的方法最近引起了广泛关注。然而,在自然界中观察到的环境 DNA 浓度与丰度之间的初步相关性通常强度适中,存在大量无法解释的变异。在这里,我们应用一种新方法将异速缩放系数整合到环境 DNA 浓度和生物丰度模型中。我们假设环境 DNA 颗粒的产生与质量呈非线性比例关系,缩放系数 <1。野生种群的个体体型分布通常存在很大的差异;因此,我们预测个体在种群中的质量分布将影响种群水平的环境 DNA 产生率。为了验证我们的假设,我们使用涉及九个鳟鱼种群的全湖实验收集了标准化的体型分布和标记-重捕丰度数据。我们将环境 DNA 浓度与丰度的三个指标进行了相关性分析:密度(个体/公顷)、生物量(千克/公顷)和异速缩放质量(ASM)(∑(个体质量)/公顷)。密度和生物量都与环境 DNA 浓度呈显著正相关(调整后的 r 值分别为 0.59 和 0.63),但 ASM 表现出更好的模型拟合度(调整后的 r 值为 0.78)。我们还展示了如何利用未知系统中的环境 DNA 样本估计 ASM,并利用额外的体型结构数据将其转换为生物量或密度估计值。未来的实验应该从经验上验证环境 DNA 产生的异速缩放系数,特别是在存在大量种内体型分布变异的情况下。纳入异速缩放系数可能会在一定程度上提高预测模型的准确性,使环境 DNA 浓度成为自然环境中生物丰度的可靠指标。

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