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本文引用的文献

1
Pseudomonas nitrititolerans sp. nov., a nitrite-tolerant denitrifying bacterium isolated from a nitrification/denitrification bioreactor.耐亚硝酸盐假单胞菌新种，一种从硝化/反硝化生物反应器中分离出的耐亚硝酸盐反硝化细菌。
Int J Syst Evol Microbiol. 2019 Aug;69(8):2471-2476. doi: 10.1099/ijsem.0.003516. Epub 2019 Jun 10.
2
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.TYGS 是一个自动化的高通量平台，用于最先进的基于基因组的分类学。
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
3
Pseudomonas syringae: enterprising epiphyte and stealthy parasite.丁香假单胞菌：进取的附生菌和隐秘的寄生菌。
Microbiology (Reading). 2019 Mar;165(3):251-253. doi: 10.1099/mic.0.000715. Epub 2018 Nov 14.
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Farm level survey of spore-forming bacteria on four dairy farms in the Waikato region of New Zealand.新西兰怀卡托地区四个奶牛场芽孢形成细菌的农场层面调查。
Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.457. Epub 2017 Mar 3.
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Bovine milk RNases modulate pro-inflammatory responses induced by nucleic acids in cultured immune and epithelial cells.牛乳核糖核酸酶可调节培养的免疫细胞和上皮细胞中由核酸诱导的促炎反应。
Dev Comp Immunol. 2017 Mar;68:87-97. doi: 10.1016/j.dci.2016.11.015. Epub 2016 Nov 19.
6
Throat Swabs and Sputum Culture as Predictors of P. aeruginosa or S. aureus Lung Colonization in Adult Cystic Fibrosis Patients.咽喉拭子和痰液培养作为成年囊性纤维化患者铜绿假单胞菌或金黄色葡萄球菌肺部定植的预测指标
PLoS One. 2016 Oct 6;11(10):e0164232. doi: 10.1371/journal.pone.0164232. eCollection 2016.
7
NCBI prokaryotic genome annotation pipeline.美国国立生物技术信息中心原核生物基因组注释管道
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
8
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.BUSCO：利用单拷贝同源基因评估基因组组装和注释的完整性。
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
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A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.A5-miseq：一种用于从Illumina MiSeq数据组装微生物基因组的更新流程。
Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.
10
Bioremediation of p-Nitrophenol by Pseudomonas putida 1274 strain.恶臭假单胞菌 1274 菌株对 p-硝基苯酚的生物修复。
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从新西兰一个绵羊奶场分离出的亚硝酸盐耐受假单胞菌AGROB37菌株的基因组序列草图

Draft Genome Sequence of Pseudomonas nitrititolerans Strain AGROB37, Isolated from a Sheep Dairy Farm in New Zealand.

作者信息

Gupta Tanushree B, Jauregui Ruy, Risson Alexis N, Brightwell Gale, Maclean Paul

机构信息

Food Assurance Team, Hopkirk Research Institute, AgResearch, Palmerston North, New Zealand

Knowledge and Analytics, Grasslands Research Centre, AgResearch, Palmerston North, New Zealand.

出版信息

Microbiol Resour Announc. 2020 Jul 9;9(28):e00564-20. doi: 10.1128/MRA.00564-20.

DOI:10.1128/MRA.00564-20
PMID:32646906
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7348024/
Abstract

We report the draft genome sequence of a new strain, AGROB37, isolated from a sheep dairy farm environment in New Zealand. The genome is 4.19 Mbp long, with a GC content of 63.2%. The genome sequence was found to be closely related to that of the type strain GL14.

摘要

我们报告了从新西兰一个绵羊奶业农场环境中分离出的新菌株AGROB37的基因组序列草图。该基因组长度为419万碱基对，GC含量为63.2%。发现该基因组序列与模式菌株GL14的序列密切相关。