从新西兰一个绵羊奶场分离出的耳蜗梭菌AGROS13菌株的基因组序列草图
Draft Genome Sequence of Clostridium cochlearium Strain AGROS13, Isolated from a Sheep Dairy Farm in New Zealand.
作者信息
Gupta Tanushree B, Maclean Paul, Jauregui Ruy, Risson Alexis N, Brightwell Gale
机构信息
Food Assurance Team, Hopkirk Research Institute, AgResearch, Palmerston North, New Zealand
Knowledge and Analytics, Grasslands Research Centre, AgResearch, Palmerston North, New Zealand.
出版信息
Microbiol Resour Announc. 2020 Jun 25;9(26):e00593-20. doi: 10.1128/MRA.00593-20.
Abstract
We report the draft genome sequence of a new strain, AGROS13, which was isolated from a sheep dairy farm environment in New Zealand. The genome is 2.7 Mbp, with a GC content of 28.2%. The genome sequence was found to be closely related to that of ATCC 17787. The new strain harbors a biosynthetic gene cluster coding for an unknown sactipeptide.
摘要
我们报告了从新西兰一个绵羊奶业农场环境中分离出的新菌株AGROS13的基因组序列草图。该基因组大小为2.7 Mbp，GC含量为28.2%。发现该基因组序列与ATCC 17787的序列密切相关。新菌株含有一个编码未知硫肽的生物合成基因簇。
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本文引用的文献
1
Antimicrobial production by strictly anaerobic Clostridium spp.
Int J Antimicrob Agents. 2020 May;55(5):105910. doi: 10.1016/j.ijantimicag.2020.105910. Epub 2020 Jan 25.
2
TYGS is an automated high-throughput platform for state-of-the-art genome-based taxonomy.
Nat Commun. 2019 May 16;10(1):2182. doi: 10.1038/s41467-019-10210-3.
3
antiSMASH 5.0: updates to the secondary metabolite genome mining pipeline.
Nucleic Acids Res. 2019 Jul 2;47(W1):W81-W87. doi: 10.1093/nar/gkz310.
4
Farm level survey of spore-forming bacteria on four dairy farms in the Waikato region of New Zealand.
Microbiologyopen. 2017 Aug;6(4). doi: 10.1002/mbo3.457. Epub 2017 Mar 3.
5
Bovine milk RNases modulate pro-inflammatory responses induced by nucleic acids in cultured immune and epithelial cells.
Dev Comp Immunol. 2017 Mar;68:87-97. doi: 10.1016/j.dci.2016.11.015. Epub 2016 Nov 19.
6
NCBI prokaryotic genome annotation pipeline.
Nucleic Acids Res. 2016 Aug 19;44(14):6614-24. doi: 10.1093/nar/gkw569. Epub 2016 Jun 24.
7
BUSCO: assessing genome assembly and annotation completeness with single-copy orthologs.
Bioinformatics. 2015 Oct 1;31(19):3210-2. doi: 10.1093/bioinformatics/btv351. Epub 2015 Jun 9.
8
Genome mining for ribosomally synthesized and post-translationally modified peptides (RiPPs) in anaerobic bacteria.
BMC Genomics. 2014 Nov 18;15(1):983. doi: 10.1186/1471-2164-15-983.
9
A5-miseq: an updated pipeline to assemble microbial genomes from Illumina MiSeq data.
Bioinformatics. 2015 Feb 15;31(4):587-9. doi: 10.1093/bioinformatics/btu661. Epub 2014 Oct 22.
10
Enumeration of clostridia in goat milk using an optimized membrane filtration technique.
J Dairy Sci. 2014 Oct;97(10):6036-45. doi: 10.3168/jds.2014-8218. Epub 2014 Aug 14.
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