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向量组学的最新进展和未来展望。

Recent advances and future perspectives in vector-omics.

机构信息

Department of Biochemistry, Virginia Tech, Blacksburg, VA 24061, United States; Fralin Life Science Institute, Virginia Tech, Blacksburg, VA 24061, United States.

Fralin Life Science Institute, Virginia Tech, Blacksburg, VA 24061, United States; Department of Entomology, Virginia Tech, Blacksburg, VA 24061, United States; The Interdisciplinary PhD Program in Genetics, Bioinformatics, and Computational Biology, Virginia Tech, Blacksburg, VA 24061, United States; Department of Genetics and Cell Biology, Tomsk State University, Tomsk 634050, Russia.

出版信息

Curr Opin Insect Sci. 2020 Aug;40:94-103. doi: 10.1016/j.cois.2020.05.006. Epub 2020 May 29.

Abstract

We have reviewed recent progress and the remaining challenges in vector-omics. We have highlighted several technologies and applications that facilitate novel biological insights beyond achieving a reference-quality genome assembly. Among other topics, we have discussed the applications of chromatin conformation capture, chromatin accessibility assays, optical mapping, full-length RNA sequencing, single cell RNA analysis, proteomics, and population genomics. We anticipate that we will witness a great expansion in vector-omics research not only in its application in a broad range of species, but also its ability to uncover novel genetic elements and tackle previously inaccessible regions of the genome. It is our hope that the continued innovation in device portability, cost reduction, and informatics support will in the foreseeable future bring vector-omics to every vector laboratory and field station in the world, which will have an unparalleled impact on basic research and the control of vector-borne infectious diseases.

摘要

我们回顾了近年来在载体组学方面的进展和遗留的挑战。我们强调了几种技术和应用,这些技术和应用除了实现参考质量的基因组组装外,还促进了新的生物学见解。在其他主题中,我们讨论了染色质构象捕获、染色质可及性分析、光学作图、全长 RNA 测序、单细胞 RNA 分析、蛋白质组学和群体基因组学的应用。我们预计,我们将见证载体组学研究的巨大扩展,不仅在其在广泛物种中的应用,而且在揭示新的遗传元件和解决以前无法访问的基因组区域方面的能力。我们希望,在可预见的未来,设备便携性、成本降低和信息学支持方面的持续创新将使载体组学能够进入世界上每个载体实验室和野外站,这将对基础研究和控制载体传播的传染病产生无与伦比的影响。

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