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阿尔茨海默病的全基因组关联研究:成就与挑战。

Epigenome-wide association studies in Alzheimer's disease; achievements and challenges.

机构信息

Department of Psychiatry and Neuropsychology, School for Mental Health and Neuroscience (MHeNs), Maastricht University, Maastricht, the Netherlands.

Division of Molecular Psychiatry, Laboratory of Translational Neuroscience, Center of Mental Health, Department of Psychiatry, University of Würzburg, Würzburg, Germany.

出版信息

Brain Pathol. 2020 Sep;30(5):978-983. doi: 10.1111/bpa.12880.

DOI:10.1111/bpa.12880
PMID:32654262
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC8018126/
Abstract

Alzheimer's disease (AD) represents a devastating progressive neurodegenerative disease with a complex pathophysiology, affecting millions of people worldwide. Recent epigenome-wide association studies suggest a key role for epigenetic mechanisms in its development and course. Despite the fact that current evidence on the role of epigenetic dysregulation in aging and AD is convincing, the pioneering field of neuroepigenetics is still facing many challenges that need to be addressed to fundamentally increase our understanding about the underlying mechanisms of this neurodegenerative disorder. This perspective paper describes the current state of play for epigenetic research into AD and discusses how new methodological advances in the field of epigenetics and related data science disciplines could further spur the development of novel therapeutic agents and biomarker assays.

摘要

阿尔茨海默病(AD)是一种具有复杂病理生理学的破坏性进行性神经退行性疾病,影响着全球数以百万计的人。最近的全基因组关联研究表明,表观遗传机制在其发展和病程中起着关键作用。尽管目前关于表观遗传失调在衰老和 AD 中的作用的证据令人信服,但神经表观遗传学这一开创性领域仍然面临着许多需要解决的挑战,这些挑战需要解决,以从根本上增加我们对这种神经退行性疾病潜在机制的理解。本文描述了 AD 表观遗传学研究的现状,并讨论了该领域的新方法学进展以及相关数据科学学科如何进一步推动新型治疗药物和生物标志物检测方法的发展。

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本文引用的文献

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A meta-analysis of epigenome-wide association studies in Alzheimer's disease highlights novel differentially methylated loci across cortex.一项针对阿尔茨海默病全表观基因组关联研究的荟萃分析突出了整个皮质中新型差异甲基化位点。
Nat Commun. 2021 Jun 10;12(1):3517. doi: 10.1038/s41467-021-23243-4.
2
Genomic mechanisms in Alzheimer's disease.阿尔茨海默病的基因组机制。
Brain Pathol. 2020 Sep;30(5):966-977. doi: 10.1111/bpa.12882.
3
Considerations for integrative multi-omic approaches to explore Alzheimer's disease mechanisms.探讨阿尔茨海默病机制的综合多组学方法的考虑因素。
Brain Pathol. 2020 Sep;30(5):984-991. doi: 10.1111/bpa.12878.
4
Applying gene-editing technology to elucidate the functional consequence of genetic and epigenetic variation in Alzheimer's disease.应用基因编辑技术阐明阿尔茨海默病中遗传和表观遗传变异的功能后果。
Brain Pathol. 2020 Sep;30(5):992-1004. doi: 10.1111/bpa.12881.
5
Guidance for DNA methylation studies: statistical insights from the Illumina EPIC array.Illumina EPIC 阵列的 DNA 甲基化研究统计分析指南
BMC Genomics. 2019 May 14;20(1):366. doi: 10.1186/s12864-019-5761-7.
6
Nucleotide distance influences co-methylation between nearby CpG sites.核苷酸距离影响附近 CpG 位点之间的共甲基化。
Genomics. 2020 Jan;112(1):144-150. doi: 10.1016/j.ygeno.2019.05.007. Epub 2019 May 10.
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Parallel profiling of DNA methylation and hydroxymethylation highlights neuropathology-associated epigenetic variation in Alzheimer's disease.平行分析 DNA 甲基化和羟甲基化,突出阿尔茨海默病神经病理学相关的表观遗传变异。
Clin Epigenetics. 2019 Mar 21;11(1):52. doi: 10.1186/s13148-019-0636-y.
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Integrated DNA methylation and gene expression profiling across multiple brain regions implicate novel genes in Alzheimer's disease.跨多个脑区的整合 DNA 甲基化和基因表达谱分析提示阿尔茨海默病的新基因。
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Prog Mol Biol Transl Sci. 2018;158:49-82. doi: 10.1016/bs.pmbts.2018.04.008. Epub 2018 Jun 5.