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柑橘木虱(半翅目:木虱科)转录组在不同发育阶段的从头组装。

De Novo Assembly of the Asian Citrus Psyllid (Hemiptera: Psyllidae) Transcriptome across Developmental Stages.

机构信息

State Key Laboratory for Conservation and Utilization of Subtropical Agro-bioresources, South China Agricultural University, Guangzhou 510642, China.

Key Laboratory of Bio-Pesticide Innovation and Application of Guangdong Province, South China Agricultural University, Guangzhou 510642, China.

出版信息

Int J Mol Sci. 2020 Jul 14;21(14):4974. doi: 10.3390/ijms21144974.

Abstract

Asian citrus psyllid Kuwayama is an important economic pest of citrus, as it transmits Liberibacter asiaticus, the causative agent of huanglongbing. In this study, we used RNA-seq to identify novel genes and provide the first high-resolution view of the of transcriptome throughout development. The transcriptomes of during eight developmental stages, including the egg, five instars, and male and female adults were sequenced. In total, 115 million clean reads were obtained and assembled into 354,726 unigenes with an average length of 925.65 bp and an N50 length of 1733 bp. Clusters of Orthologous Groups, Gene Ontology, and Kyoto Encyclopedia of Genes and Genomes analyses were conducted to functionally annotate the genes. Differential expression analysis highlighted developmental stage-specific expression patterns. Furthermore, two trehalase genes were characterized with lower expression in adults compared to that in the other stages. The RNA interference (RNAi)-mediated suppression of the two trehalase genes resulted in significantly high mortality. This study enriched the genomic information regarding . Importantly, these data represent the most comprehensive transcriptomic resource currently available for and will facilitate functional genomics studies of this notorious pest.

摘要

亚洲柑橘木虱 Kuwayama 是柑橘的重要经济害虫,因为它传播黄龙病菌的病原体亚洲韧皮杆菌。在这项研究中,我们使用 RNA-seq 鉴定了新的基因,并提供了发育过程中转录组的首个高分辨率视图。在八个发育阶段(包括卵、五个龄期和雌雄成虫)中对 进行了转录组测序。总共获得了 1.15 亿个清洁读数,并组装成 354726 个具有平均长度为 925.65bp 和 N50 长度为 1733bp 的 unigenes。进行了同源基因簇、基因本体论和京都基因与基因组百科全书分析,以对基因进行功能注释。差异表达分析突出了发育阶段特异性的表达模式。此外,与其他阶段相比,两个海藻糖酶基因在成虫中的表达水平较低。这两个海藻糖酶基因的 RNA 干扰(RNAi)介导的抑制导致 死亡率显著升高。这项研究丰富了关于 的基因组信息。重要的是,这些数据代表了目前针对该臭名昭著的害虫可用的最全面的转录组资源,并将促进对该害虫的功能基因组学研究。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/13e7/7404022/b86028cb6190/ijms-21-04974-g001.jpg

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