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拼接和微处理器复合物之间的拮抗作用决定了血清诱导的 lnc- 的加工,以实现有效的细胞周期再进入。

Antagonism between splicing and microprocessor complex dictates the serum-induced processing of lnc- for efficient cell cycle reentry.

机构信息

Department of Cell and Developmental Biology, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

Department of Biochemistry, University of Illinois at Urbana-Champaign, Urbana, Illinois 61801, USA.

出版信息

RNA. 2020 Nov;26(11):1603-1620. doi: 10.1261/rna.075309.120. Epub 2020 Jul 16.

Abstract

Cellular quiescence and cell cycle reentry regulate vital biological processes such as cellular development and tissue homeostasis and are controlled by precise regulation of gene expression. The roles of long noncoding RNAs (lncRNAs) during these processes remain to be elucidated. By performing genome-wide transcriptome analyses, we identify differential expression of several hundreds of lncRNAs, including a significant number of the less-characterized class of microRNA-host-gene () lncRNAs or lnc-, during cellular quiescence and cell cycle reentry in human diploid fibroblasts. We observe that lncRNA displays serum-stimulated RNA processing due to enhanced splicing of the host nascent pri- transcript. The pre-mRNA splicing factor SRSF1 negatively regulates the microprocessor-catalyzed cleavage of pri-miR-222, thereby increasing the cellular pool of the mature Association of SRSF1 to pri-, including to a mini-exon, which partially overlaps with the primary miR-222 precursor, promotes serum-stimulated splicing over microRNA processing of Further, we observe that the increased levels of spliced in serum-stimulated cells promote the cell cycle reentry post quiescence in a microRNA-independent manner. interacts with , another lncRNA whose expression is elevated upon serum-stimulation, and promotes cell cycle reentry. The double-stranded RNA binding protein ILF3/2 complex facilitates : RNP complex assembly, thereby promoting RNA stability. Our study identifies a novel mechanism whereby competition between the splicing and microprocessor machinery modulates the serum-induced RNA processing of , which dictates cell cycle reentry.

摘要

细胞静止和细胞周期再进入调节重要的生物学过程,如细胞发育和组织稳态,并且由基因表达的精确调节控制。长非编码 RNA (lncRNA) 在这些过程中的作用仍有待阐明。通过进行全基因组转录组分析,我们在人二倍体成纤维细胞的细胞静止和细胞周期再进入过程中鉴定了数百个 lncRNA 的差异表达,包括大量较少特征的 microRNA 宿主基因 () lncRNA 或 lnc-。我们观察到 lncRNA 由于宿主新生 pri- 转录物的剪接增强而表现出血清刺激的 RNA 加工。前 mRNA 剪接因子 SRSF1 负调节微处理器催化的 pri-miR-222 的切割,从而增加成熟的 的细胞池。SRSF1 与 pri- 的关联,包括与部分重叠的初级 miR-222 前体的 mini-exon,促进血清刺激的剪接而不是 microRNA 处理 。此外,我们观察到在血清刺激的细胞中增加的剪接 以 microRNA 非依赖性方式促进静止后细胞周期再进入。 与另一种在血清刺激时表达上调的 lncRNA 相互作用,并促进细胞周期再进入。双链 RNA 结合蛋白 ILF3/2 复合物促进 : RNP 复合物组装,从而促进 RNA 稳定性。我们的研究确定了一种新的机制,即剪接和微处理器机制之间的竞争调节血清诱导的 的 RNA 加工,从而决定细胞周期再进入。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6829/7566567/21cf2c51c357/1603f01.jpg

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