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用于溯源的微生物群落差异及其在法医学研究中的应用。

Microbial community dissimilarity for source tracking with application in forensic studies.

机构信息

Interdisciplinary Program in Statistics and Data Science, The University of Arizona, Tucson, Arizona, United States.

Department of Biosystems Engineering, University of Arizona, Tucson, Arizona, United States of America.

出版信息

PLoS One. 2020 Jul 23;15(7):e0236082. doi: 10.1371/journal.pone.0236082. eCollection 2020.

Abstract

Microbial source-tracking is a useful tool for trace evidence analysis in Forensics. Community-wide massively parallel sequencing profiles can bypass the need for satellite microbes or marker sets, which are unreliable when handling unstable samples. We propose a novel method utilizing Aitchison distance to select important suspects/sources, and then integrate it with existing algorithms in source tracking to estimate the proportions of microbial sample coming from important suspects/sources. A series of comprehensive simulation studies show that the proposed method is capable of accurate selection and therefore improves the performance of current methods such as Bayesian SourceTracker and FEAST in the presence of noise microbial sources.

摘要

微生物源追踪是法医学中痕量证据分析的有用工具。全社区大规模并行测序谱可以避免使用卫星微生物或标记物集,因为在处理不稳定样本时这些方法不可靠。我们提出了一种利用艾奇逊距离选择重要嫌疑/源的新方法,然后将其与源追踪中的现有算法集成,以估计来自重要嫌疑/源的微生物样本的比例。一系列全面的模拟研究表明,该方法能够进行准确的选择,因此在存在噪声微生物源的情况下,提高了贝叶斯源追踪器和 FEAST 等现有方法的性能。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/f75c/7377425/731c5eafad0e/pone.0236082.g001.jpg

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