Dolui Achintya Kumar, Vijayaraj Panneerselvam
Department of Lipid Science, CSIR-Central Food Technological Research Institute, Mysuru, Karnataka 570020 India.
Academy of Scientific and Innovative Research, Ghaziabad, Uttar Pradesh 201002 India.
3 Biotech. 2020 Aug;10(8):343. doi: 10.1007/s13205-020-02338-7. Epub 2020 Jul 20.
Extracting protein in its active form is critical for its functional characterization, and lipid removal is an essential step in the protein extraction process for further downstream applications. In the present study, we revisited the delipidation protocol and developed a rapid, solvent-free delipidation method using activated silica. The delipidated samples showed improved optical clarity and a significant reduction of endogenous lipids. The functional integrity of the lipases present in the delipidated sample was validated by in vitro enzyme assay using physiological substrate which includes neutral lipid as well as phospholipid. The accessibility of active site of the extracted enzymes was demonstrated by activity-based protein profiling (ABPP), a functional chemoproteomic approach. Detection of serine hydrolases using ABPP probe labeling was enhanced upon delipidation. Further, the total polyphenol content was significantly reduced, which helps to enhance the protein enrichment and small-molecule inhibitor screening by ABPP. Collectively, these results suggest that the present solvent-free delipidation approach is efficient and highly compatible with the functional characterization of the enzymes, particularly lipid hydrolases.
提取处于活性形式的蛋白质对于其功能表征至关重要,而去除脂质是蛋白质提取过程中进行进一步下游应用的关键步骤。在本研究中,我们重新审视了脱脂方案,并开发了一种使用活化硅胶的快速、无溶剂脱脂方法。脱脂后的样品光学清晰度提高,内源性脂质显著减少。通过使用包括中性脂质和磷脂在内的生理底物进行体外酶测定,验证了脱脂样品中存在的脂肪酶的功能完整性。通过基于活性的蛋白质谱分析(ABPP)这一功能化化学蛋白质组学方法,证明了提取酶活性位点的可及性。脱脂后,使用ABPP探针标记检测丝氨酸水解酶的效果增强。此外,总多酚含量显著降低,这有助于通过ABPP提高蛋白质富集和小分子抑制剂筛选效率。总体而言,这些结果表明,目前的无溶剂脱脂方法高效且与酶的功能表征高度兼容,尤其是脂质水解酶。