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利用基因组启动子 CpG 密度估算海洋龟类的寿命。

Lifespan estimation in marine turtles using genomic promoter CpG density.

机构信息

Environomics Future Science Platform, Indian Oceans Marine Research Centre, Commonwealth Scientific and Industrial Research Organisation, Crawley, Western Australia, Australia.

Department of Biodiversity, Conservation and Attractions, Marine Science Program, Kensington, Western Australia, Australia.

出版信息

PLoS One. 2020 Jul 31;15(7):e0236888. doi: 10.1371/journal.pone.0236888. eCollection 2020.

Abstract

Maximum lifespan for most animal species is difficult to define. This is challenging for wildlife management as it is critical for estimating important aspects of population biology such as mortality rate, population viability, and period of reproductive potential. Recently, it has been shown cytosine-phosphate-guanine (CpG) density is predictive of maximum lifespan in vertebrates. This has made it possible to predict lifespan in long-lived species, which are generally the most intractable. In this study, we use gene promoter CpG density to predict the lifespan of five marine turtle species. Marine turtles are a particularly difficult group for lifespan estimation because of their migratory behaviour, longevity and high juvenile mortality rates, which all restrict individual tracking over their lifespan. Sanger sequencing was used to determine the CpG density in selected promoters. We predicted the lifespans for marine turtle species ranged from 50.4 years (flatback turtle, Natator depressus) to 90.4 years (leatherback turtle, Dermochelys coriacea). These lifespan predictions have broad applications in marine turtle research such as better understanding life cycles and determining population viability.

摘要

对于大多数动物物种来说,最大寿命很难界定。这对野生动物管理来说是一个挑战,因为它对估计种群生物学的重要方面至关重要,如死亡率、种群活力和生殖潜力期。最近,已经表明胞嘧啶-磷酸-鸟嘌呤(CpG)密度可以预测脊椎动物的最大寿命。这使得预测长寿物种的寿命成为可能,而长寿物种通常是最棘手的。在这项研究中,我们使用基因启动子 CpG 密度来预测五种海龟物种的寿命。由于海龟的迁徙行为、长寿和高幼体死亡率,对其寿命进行估计特别困难,这些因素都限制了对个体在其整个寿命期间的追踪。桑格测序用于确定选定启动子中的 CpG 密度。我们预测的海龟物种寿命范围从 50.4 年(平背海龟,Natator depressus)到 90.4 年(棱皮龟,Dermochelys coriacea)。这些寿命预测在海龟研究中有广泛的应用,例如更好地了解生命周期和确定种群活力。

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