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通过综合运用传统方法和高通量SPET基因分型促进保护:以濒危加那利群岛特有植物和(茄科)为例的研究

Fostering Conservation via an Integrated Use of Conventional Approaches and High-Throughput SPET Genotyping: A Case Study Using the Endangered Canarian Endemics and (Solanaceae).

作者信息

Gramazio Pietro, Jaén-Molina Ruth, Vilanova Santiago, Prohens Jaime, Marrero Águedo, Caujapé-Castells Juli, Anderson Gregory J

机构信息

Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Japan.

Instituto de Conservación y Mejora de la Agrodiversidad Valenciana, Universitat Politècnica de València, Valencia, Spain.

出版信息

Front Plant Sci. 2020 Jul 10;11:757. doi: 10.3389/fpls.2020.00757. eCollection 2020.

DOI:10.3389/fpls.2020.00757
PMID:32754166
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7381301/
Abstract

Islands provide unique opportunities to integrated research approaches to study evolution and conservation because boundaries are circumscribed, geological ages are often precise, and many taxa are greatly imperiled. We combined morphological and hybridization studies with high-throughput genotyping platforms to streamline relationships in the endangered monophyletic and highly diverse lineage of in the Canarian archipelago, where three endemic taxa are currently recognized. Inter-taxa hybridizations were performed, and morphological expression was assessed with a common-garden approach. Using the eggplant Single Primer Enrichment Technology (SPET) platform with 5,093 probes, 74 individuals of three endemic taxa (, subsp. , and subsp. ) were sampled for SNPs. While morphological and breeding studies showed clear distinctions and some continuous variation, inter-taxon hybrids were fertile and heterotic for vigor traits. SPET genotyping revealed 1,421 high-quality SNPs and supported four, not three, distinct taxonomic entities associated with post-emergence geological, ecological and geographic factors of the islands. Given the lack of barriers to hybridization among all the taxa and their molecular differences, great care must be taken in population management. Conservation strategies must take account of the sexual and breeding systems and genotypic distribution among populations to successfully conserve and restore threatened/endangered island taxa, as exemplified by on the Canary Islands.

摘要

岛屿为综合研究进化与保护提供了独特机会,因为其边界明确、地质年代通常精确,且许多分类群面临极大威胁。我们将形态学和杂交研究与高通量基因分型平台相结合,以梳理加那利群岛濒危单系且高度多样化谱系中的关系,该群岛目前已确认有三个特有分类群。进行了种间杂交,并采用同园种植法评估形态表达。使用具有5093个探针的茄子单引物富集技术(SPET)平台,对三个特有分类群([具体名称1]、[具体名称2]亚种[具体名称3]和[具体名称4]亚种[具体名称5])的74个个体进行单核苷酸多态性(SNP)采样。虽然形态学和育种研究显示出明显差异以及一些连续变异,但种间杂种具有生育能力,且在活力性状上表现出杂种优势。SPET基因分型揭示了1421个高质量SNP,并支持与岛屿出现后的地质、生态和地理因素相关的四个而非三个不同分类实体。鉴于所有分类群之间杂交缺乏障碍以及它们的分子差异,在种群管理中必须格外谨慎。保护策略必须考虑到性和繁殖系统以及种群间的基因型分布,以成功保护和恢复受威胁/濒危的岛屿分类群,加那利群岛上的[具体物种名称]就是例证。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/e6d1ea27016c/fpls-11-00757-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/a6384d01d660/fpls-11-00757-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/5feff944e4f7/fpls-11-00757-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/4d41e302c4c4/fpls-11-00757-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/e6d1ea27016c/fpls-11-00757-g004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/a6384d01d660/fpls-11-00757-g001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/5feff944e4f7/fpls-11-00757-g002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/4d41e302c4c4/fpls-11-00757-g003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/ab6f/7381301/e6d1ea27016c/fpls-11-00757-g004.jpg

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