Roy Urmi
Department of Chemistry & Biomolecular Science, Clarkson University, 8 Clarkson Avenue, Potsdam, NY 13699-5820, United States.
Comput Biol Chem. 2020 Oct;88:107353. doi: 10.1016/j.compbiolchem.2020.107353. Epub 2020 Jul 31.
Structure-based molecular designs play a critical role in the context of next generation drug development. Besides their fundamental scientific aspects, the findings established in this approach have significant implications in the expansions of target-based therapies and vaccines. Interleukin-18 (IL-18), also known as interferon gamma (IFN-γ) inducing factor, is a pro-inflammatory cytokine. The IL-18 binds first to the IL-18α receptor and forms a lower affinity complex. Upon binding with IL-18β a hetero-trimeric complex with higher affinity is formed that initiates the signal transduction process. The present study, including structural and molecular dynamics simulations, takes a close look at the structural stabilities of IL-18 and IL-18 receptor-bound ligand structures as functions of time. The results help to identify the conformational changes of the ligand due to receptor binding, as well as the structural orders of the apo and holo IL-18 protein complexes.
基于结构的分子设计在下一代药物开发中起着关键作用。除了其基础科学方面,这种方法所取得的研究结果在基于靶点的治疗和疫苗的扩展方面具有重要意义。白细胞介素-18(IL-18),也被称为干扰素γ(IFN-γ)诱导因子,是一种促炎细胞因子。IL-18首先与IL-18α受体结合,形成一个低亲和力复合物。与IL-18β结合后,会形成一个具有更高亲和力的异源三聚体复合物,从而启动信号转导过程。本研究,包括结构和分子动力学模拟,仔细研究了IL-18以及与IL-18受体结合的配体结构随时间变化的结构稳定性。这些结果有助于确定由于受体结合导致的配体构象变化,以及无配体和有配体的IL-18蛋白质复合物的结构顺序。