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比较基因组学揭示了海洋蓝细菌的独特性和生物合成潜力。

Comparative Genomics Discloses the Uniqueness and the Biosynthetic Potential of the Marine Cyanobacterium .

作者信息

Brito Ângela, Vieira Jorge, Vieira Cristina P, Zhu Tao, Leão Pedro N, Ramos Vitor, Lu Xuefeng, Vasconcelos Vitor M, Gugger Muriel, Tamagnini Paula

机构信息

i3S - Instituto de Investigação e Inovação em Saúde, Universidade do Porto, Porto, Portugal.

IBMC - Instituto de Biologia Molecular e Celular, Universidade do Porto, Porto, Portugal.

出版信息

Front Microbiol. 2020 Jul 7;11:1527. doi: 10.3389/fmicb.2020.01527. eCollection 2020.

Abstract

Baeocytous cyanobacteria (Pleurocapsales/Subsection II) can thrive in a wide range of habitats on Earth but, compared to other cyanobacterial lineages, they remain poorly studied at genomic level. In this study, we sequenced the first genome from a member of the genus - LEGE 07179, a recently described species isolated from the Portuguese foreshore. This genome is the largest of the thirteen baeocyte-forming cyanobacterial genomes sequenced so far, and diverges from the most closely related strains. Comparative analysis revealed strain-specific genes and horizontal gene transfer events between and its closest relatives. Moreover, . genome is distinctive by the number and diversity of natural product biosynthetic gene clusters (BGCs). The majority of these clusters are strain-specific BGCs with a high probability of synthesizing novel natural products. One BGC was identified as being putatively involved in the production of terminal olefin. Our results showed that, . produces hydrocarbon with C chain length, and synthesizes C, C, and C fatty acids exceeding 4% of the dry cell weight. Overall, our data contributed to increase the information on baeocytous cyanobacteria, and shed light on evolution, phylogeny and natural product biosynthetic potential.

摘要

球状体蓝细菌(皮果藻目/第二亚组)能在地球上广泛的栖息地中茁壮成长,但与其他蓝细菌谱系相比,它们在基因组水平上的研究仍然很少。在本研究中,我们对来自LEGE 07179属的一个成员进行了首次基因组测序,该成员是最近从葡萄牙海岸分离出的一个物种。这个基因组是迄今为止测序的13个形成球状体的蓝细菌基因组中最大的,并且与关系最密切的菌株有所不同。比较分析揭示了该菌株特异性基因以及与其最亲近亲属之间的水平基因转移事件。此外,该基因组在天然产物生物合成基因簇(BGCs)的数量和多样性方面具有独特性。这些簇中的大多数是菌株特异性BGCs,极有可能合成新型天然产物。一个BGC被确定可能参与末端烯烃的产生。我们的结果表明,该菌株产生具有特定碳链长度的烃类,并合成占干细胞重量超过4%的C、C和C脂肪酸。总体而言,我们的数据有助于增加关于球状体蓝细菌的信息,并揭示其进化、系统发育和天然产物生物合成潜力。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/1f5b/7381351/9c7d6a32be6b/fmicb-11-01527-g001.jpg

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