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作为生物技术资产保存在微生物生物资源中心的蓝藻多样性:新建的LEGE培养物保藏中心案例研究

Cyanobacterial diversity held in microbial biological resource centers as a biotechnological asset: the case study of the newly established LEGE culture collection.

作者信息

Ramos Vitor, Morais João, Castelo-Branco Raquel, Pinheiro Ângela, Martins Joana, Regueiras Ana, Pereira Ana L, Lopes Viviana R, Frazão Bárbara, Gomes Dina, Moreira Cristiana, Costa Maria Sofia, Brûle Sébastien, Faustino Silvia, Martins Rosário, Saker Martin, Osswald Joana, Leão Pedro N, Vasconcelos Vitor M

机构信息

1Interdisciplinary Centre of Marine and Environmental Research (CIIMAR/CIMAR), Terminal de Cruzeiros do Porto de Leixões, University of Porto, 4450-208 Matosinhos, Portugal.

2Faculdade de Ciências, Universidade do Porto, Rua do Campo Alegre, Edifício FC4, 4169-007 Porto, Portugal.

出版信息

J Appl Phycol. 2018;30(3):1437-1451. doi: 10.1007/s10811-017-1369-y. Epub 2018 Jan 6.

Abstract

Cyanobacteria are a well-known source of bioproducts which renders culturable strains a valuable resource for biotechnology purposes. We describe here the establishment of a cyanobacterial culture collection (CC) and present the first version of the strain catalog and its online database (http://lege.ciimar.up.pt/). The LEGE CC holds 386 strains, mainly collected in coastal (48%), estuarine (11%), and fresh (34%) water bodies, for the most part from Portugal (84%). By following the most recent taxonomic classification, LEGE CC strains were classified into at least 46 genera from six orders (41% belong to the Synechococcales), several of them are unique among the phylogenetic diversity of the cyanobacteria. For all strains, primary data were obtained and secondary data were surveyed and reviewed, which can be reached through the strain sheets either in the catalog or in the online database. An overview on the notable biodiversity of LEGE CC strains is showcased, including a searchable phylogenetic tree and images for all strains. With this work, 80% of the LEGE CC strains have now their 16S rRNA gene sequences deposited in GenBank. Also, based in primary data, it is demonstrated that several LEGE CC strains are a promising source of extracellular polymeric substances (EPS). Through a review of previously published data, it is exposed that LEGE CC strains have the potential or actual capacity to produce a variety of biotechnologically interesting compounds, including common cyanotoxins or unprecedented bioactive molecules. Phylogenetic diversity of LEGE CC strains does not entirely reflect chemodiversity. Further bioprospecting should, therefore, account for strain specificity of the valuable cyanobacterial holdings of LEGE CC.

摘要

蓝藻是生物产品的著名来源,这使得可培养菌株成为生物技术领域的宝贵资源。我们在此描述了一个蓝藻培养物保藏中心(CC)的建立,并展示了菌株目录的第一版及其在线数据库(http://lege.ciimar.up.pt/)。LEGE CC保藏了386株菌株,主要采集自沿海(48%)、河口(11%)和淡水(34%)水体,大部分来自葡萄牙(84%)。按照最新的分类学分类,LEGE CC的菌株被归入六个目下的至少46个属(41%属于聚球藻目),其中一些在蓝藻的系统发育多样性中是独一无二的。对于所有菌株,获取了原始数据,并对二手数据进行了调查和审查,这些数据可通过目录或在线数据库中的菌株信息表获取。展示了LEGE CC菌株显著生物多样性的概述,包括一棵可搜索的系统发育树和所有菌株的图像。通过这项工作,现在80%的LEGE CC菌株的16S rRNA基因序列已存入GenBank。此外,基于原始数据,证明了几种LEGE CC菌株是细胞外聚合物(EPS)的有前途的来源。通过对先前发表数据的审查,发现LEGE CC菌株具有产生多种具有生物技术意义的化合物的潜力或实际能力,包括常见的蓝藻毒素或前所未有的生物活性分子。LEGE CC菌株的系统发育多样性并不完全反映化学多样性。因此,进一步的生物勘探应考虑LEGE CC中珍贵蓝藻藏品的菌株特异性。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/369e/5982461/c2ca8244544a/10811_2017_1369_Fig1_HTML.jpg

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