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黄酮类化合物通过结合催化口袋可逆地抑制杜氏利什曼原虫酪氨酸转氨酶:一种整合的计算与体外方法。

Flavones reversibly inhibit Leishmania donovani tyrosine aminotransferase by binding to the catalytic pocket: An integrated in silico-in vitro approach.

机构信息

Department of Biotechnology, National Institute of Technology, Warangal, 506004, Telangana, India.

Department of Biotechnology, National Institute of Technology, Warangal, 506004, Telangana, India.

出版信息

Int J Biol Macromol. 2020 Dec 1;164:2987-3004. doi: 10.1016/j.ijbiomac.2020.08.107. Epub 2020 Aug 13.

Abstract

The current drugs for treating Leishmaniasis are toxic, non-economical and with the emergence of drug resistance makes the need for novel therapeutics urgent and necessary. In the current study, we report the identification of compounds TI 1-5 against tyrosine aminotransferase of L. donovani from a curated ZINC15 database containing 183,659 compounds. These flavonoid compounds had binding energies < -8 kcal/mol and interacted with the active site residues S151, K286, C290, and P291. Assessment of physicochemical descriptors and ADMET properties established the drug likeliness of these compounds. The all-atom molecular dynamic simulations of the TAT-TI complexes exhibited stable geometrical properties and further trajectory analysis revealed the high-affinity interactions of TI 1, 3, 4, and 5 with the active site residues. DFT calculations reported the high electrophilic nature of TI 2 while other TI compounds demonstrated good kinetic stability and reactivity. From in vitro studies, TI 3 and TI 4 had the highest inhibition with Ki values of 0.9 ± 0.2 μM and 0.30 ± 0.1 μM, respectively. Taken together, the results from this study indicate the potentiality of TI 1, 3, 4, and 5 as anti-leishmanial leads, and these compounds can be exploited to manage the growing Leishmaniasis crisis in the world.

摘要

目前治疗利什曼病的药物具有毒性、不经济,并且随着耐药性的出现,迫切需要新的治疗方法。在目前的研究中,我们报告了从包含 183659 种化合物的经过精心筛选的 ZINC15 数据库中鉴定出针对利什曼原虫酪氨酸转氨酶的 TI 1-5 化合物。这些黄酮类化合物的结合能<-8 kcal/mol,并与活性位点残基 S151、K286、C290 和 P291 相互作用。评估物理化学描述符和 ADMET 特性确定了这些化合物的药物相似性。TAT-TI 复合物的全原子分子动力学模拟表现出稳定的几何性质,进一步的轨迹分析表明 TI 1、3、4 和 5 与活性位点残基具有高亲和力相互作用。DFT 计算报告 TI 2 具有高亲电性,而其他 TI 化合物表现出良好的动力学稳定性和反应性。从体外研究来看,TI 3 和 TI 4 的抑制作用最强,Ki 值分别为 0.9±0.2 μM 和 0.30±0.1 μM。综上所述,这项研究的结果表明 TI 1、3、4 和 5 具有作为抗利什曼原虫先导化合物的潜力,这些化合物可用于应对世界范围内日益严重的利什曼病危机。

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