• 文献检索
  • 文档翻译
  • 深度研究
  • 学术资讯
  • Suppr Zotero 插件Zotero 插件
  • 邀请有礼
  • 套餐&价格
  • 历史记录
应用&插件
Suppr Zotero 插件Zotero 插件浏览器插件Mac 客户端Windows 客户端微信小程序
定价
高级版会员购买积分包购买API积分包
服务
文献检索文档翻译深度研究API 文档MCP 服务
关于我们
关于 Suppr公司介绍联系我们用户协议隐私条款
关注我们

Suppr 超能文献

核心技术专利:CN118964589B侵权必究
粤ICP备2023148730 号-1Suppr @ 2026

文献检索

告别复杂PubMed语法,用中文像聊天一样搜索,搜遍4000万医学文献。AI智能推荐,让科研检索更轻松。

立即免费搜索

文件翻译

保留排版,准确专业,支持PDF/Word/PPT等文件格式,支持 12+语言互译。

免费翻译文档

深度研究

AI帮你快速写综述,25分钟生成高质量综述,智能提取关键信息,辅助科研写作。

立即免费体验

基于正则化的高维广义线性模型自适应检验

A Regularization-Based Adaptive Test for High-Dimensional Generalized Linear Models.

作者信息

Wu Chong, Xu Gongjun, Shen Xiaotong, Pan Wei

机构信息

Department of Statistics, Florida State University, FL, USA.

Department of Statistics, University of Michigan, MI, USA.

出版信息

J Mach Learn Res. 2020;21. Epub 2020 Jul 26.

PMID:32802002
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7425805/
Abstract

In spite of its urgent importance in the era of big data, testing high-dimensional parameters in generalized linear models (GLMs) in the presence of high-dimensional nuisance parameters has been largely under-studied, especially with regard to constructing powerful tests for general (and unknown) alternatives. Most existing tests are powerful only against certain alternatives and may yield incorrect Type I error rates under high-dimensional nuisance parameter situations. In this paper, we propose the adaptive interaction sum of powered score (aiSPU) test in the framework of penalized regression with a non-convex penalty, called truncated Lasso penalty (TLP), which can maintain correct Type I error rates while yielding high statistical power across a wide range of alternatives. To calculate its -values analytically, we derive its asymptotic null distribution. Via simulations, its superior finite-sample performance is demonstrated over several representative existing methods. In addition, we apply it and other representative tests to an Alzheimer's Disease Neuroimaging Initiative (ADNI) data set, detecting possible gene-gender interactions for Alzheimer's disease. We also put R package "" implementing the proposed test on GitHub.

摘要

尽管在大数据时代其具有紧迫性,但在存在高维干扰参数的情况下,对广义线性模型(GLMs)中的高维参数进行检验在很大程度上仍未得到充分研究,特别是在构建针对一般(且未知)备择假设的强大检验方面。大多数现有检验仅对某些备择假设有效,并且在高维干扰参数情况下可能会产生错误的第一类错误率。在本文中,我们在具有非凸惩罚(称为截断套索惩罚(TLP))的惩罚回归框架下提出了自适应幂得分交互和(aiSPU)检验,该检验可以保持正确的第一类错误率,同时在广泛的备择假设范围内具有高统计功效。为了通过解析计算其p值,我们推导了其渐近零分布。通过模拟,证明了它相对于几种有代表性的现有方法具有优越的有限样本性能。此外,我们将其与其他代表性检验应用于阿尔茨海默病神经影像倡议(ADNI)数据集,检测阿尔茨海默病可能的基因 - 性别相互作用。我们还在GitHub上发布了实现所提出检验的R包“”。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/f5dea2dace6e/nihms-1605534-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/7314972fd3be/nihms-1605534-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/fe2b83b411ce/nihms-1605534-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/1095ba3bb71a/nihms-1605534-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/1ac5895cedd8/nihms-1605534-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/f5dea2dace6e/nihms-1605534-f0005.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/7314972fd3be/nihms-1605534-f0001.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/fe2b83b411ce/nihms-1605534-f0002.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/1095ba3bb71a/nihms-1605534-f0003.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/1ac5895cedd8/nihms-1605534-f0004.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/faf0/7425805/f5dea2dace6e/nihms-1605534-f0005.jpg

相似文献

1
A Regularization-Based Adaptive Test for High-Dimensional Generalized Linear Models.基于正则化的高维广义线性模型自适应检验
J Mach Learn Res. 2020;21. Epub 2020 Jul 26.
2
Testing for association with multiple traits in generalized estimation equations, with application to neuroimaging data.广义估计方程中多性状关联检验及其在神经影像学数据中的应用。
Neuroimage. 2014 Aug 1;96:309-25. doi: 10.1016/j.neuroimage.2014.03.061. Epub 2014 Apr 1.
3
Testing generalized linear models with high-dimensional nuisance parameter.检验具有高维干扰参数的广义线性模型。
Biometrika. 2023 Mar;110(1):83-99. doi: 10.1093/biomet/asac021. Epub 2022 Apr 5.
4
LINEAR HYPOTHESIS TESTING FOR HIGH DIMENSIONAL GENERALIZED LINEAR MODELS.高维广义线性模型的线性假设检验
Ann Stat. 2019 Oct;47(5):2671-2703. doi: 10.1214/18-AOS1761. Epub 2019 Aug 3.
5
On high-dimensional Poisson models with measurement error: Hypothesis testing for nonlinear nonconvex optimization.关于具有测量误差的高维泊松模型:非线性非凸优化的假设检验
Ann Stat. 2023 Feb;51(1):233-259. doi: 10.1214/22-aos2248. Epub 2023 Mar 23.
6
Penalized regression approaches to testing for quantitative trait-rare variant association.惩罚回归方法在检测数量性状-稀有变异关联中的应用。
Front Genet. 2014 May 13;5:121. doi: 10.3389/fgene.2014.00121. eCollection 2014.
7
A New Algorithm and Theory for Penalized Regression-based Clustering.一种基于惩罚回归聚类的新算法与理论
J Mach Learn Res. 2016;17.
8
An adaptive two-sample test for high-dimensional means.一种针对高维均值的自适应双样本检验。
Biometrika. 2016 Sep;103(3):609-624. doi: 10.1093/biomet/asw029. Epub 2017 Mar 18.
9
A note on the effect on power of score tests via dimension reduction by penalized regression under the null.关于在原假设下通过惩罚回归进行降维对得分检验功效的影响的一则注释。
Int J Biostat. 2010 Mar 29;6(1):Article 12. doi: 10.2202/1557-4679.1231.
10
ADAPTIVE ROBUST VARIABLE SELECTION.自适应鲁棒变量选择
Ann Stat. 2014 Feb 1;42(1):324-351. doi: 10.1214/13-AOS1191.

引用本文的文献

1
Testing generalized linear models with high-dimensional nuisance parameter.检验具有高维干扰参数的广义线性模型。
Biometrika. 2023 Mar;110(1):83-99. doi: 10.1093/biomet/asac021. Epub 2022 Apr 5.
2
InTACT: An adaptive and powerful framework for joint-tissue transcriptome-wide association studies.InTACT:一种用于联合组织转录组全基因组关联研究的自适应和强大的框架。
Genet Epidemiol. 2021 Dec;45(8):848-859. doi: 10.1002/gepi.22425. Epub 2021 Jul 13.

本文引用的文献

1
ASYMPTOTICALLY INDEPENDENT U-STATISTICS IN HIGH-DIMENSIONAL TESTING.高维检验中渐近独立的U统计量
Ann Stat. 2021 Feb;49(1):154-181. doi: 10.1214/20-aos1951. Epub 2021 Jan 29.
2
Estimation and Inference for High Dimensional Generalized Linear Models: A Splitting and Smoothing Approach.高维广义线性模型的估计与推断:一种分裂与平滑方法。
J Mach Learn Res. 2021;22.
3
Global and Simultaneous Hypothesis Testing for High-Dimensional Logistic Regression Models.高维逻辑回归模型的全局和同步假设检验
J Am Stat Assoc. 2021;116(534):984-998. doi: 10.1080/01621459.2019.1699421. Epub 2020 Jan 21.
4
Likelihood ratio tests for a large directed acyclic graph.针对大型有向无环图的似然比检验。
J Am Stat Assoc. 2020;115(531):1304-1319. doi: 10.1080/01621459.2019.1623042. Epub 2019 Jun 25.
5
On High-Dimensional Constrained Maximum Likelihood Inference.关于高维约束最大似然推断
J Am Stat Assoc. 2020;115(529):217-230. doi: 10.1080/01621459.2018.1540986. Epub 2019 Apr 11.
6
LINEAR HYPOTHESIS TESTING FOR HIGH DIMENSIONAL GENERALIZED LINEAR MODELS.高维广义线性模型的线性假设检验
Ann Stat. 2019 Oct;47(5):2671-2703. doi: 10.1214/18-AOS1761. Epub 2019 Aug 3.
7
A modern maximum-likelihood theory for high-dimensional logistic regression.一种高维逻辑回归的现代极大似然理论。
Proc Natl Acad Sci U S A. 2019 Jul 16;116(29):14516-14525. doi: 10.1073/pnas.1810420116. Epub 2019 Jul 1.
8
Trans Effects on Gene Expression Can Drive Omnigenic Inheritance.转录效应对基因表达的影响可驱动全基因组遗传。
Cell. 2019 May 2;177(4):1022-1034.e6. doi: 10.1016/j.cell.2019.04.014.
9
FunSPU: A versatile and adaptive multiple functional annotation-based association test of whole-genome sequencing data.FunSPU:一种基于多功能注释的全基因组测序数据关联测试的通用和自适应方法。
PLoS Genet. 2019 Apr 29;15(4):e1008081. doi: 10.1371/journal.pgen.1008081. eCollection 2019 Apr.
10
The NHGRI-EBI GWAS Catalog of published genome-wide association studies, targeted arrays and summary statistics 2019.NHGRI-EBI GWAS Catalog 于 2019 年发布的已发表全基因组关联研究、靶向基因芯片和汇总统计数据
Nucleic Acids Res. 2019 Jan 8;47(D1):D1005-D1012. doi: 10.1093/nar/gky1120.