Karray Fatma, Gargouri Mahmoud, Chebaane Asma, Mhiri Najla, Mliki Ahmed, Sayadi Sami
Laboratory of Environmental Bioprocesses, Centre of Biotechnology of Sfax, Sfax, Tunisia.
Laboratory of Plant Molecular Physiology, Centre of Biotechnology of Borj Cedria, Hammam-Lif, Tunisia.
Front Microbiol. 2020 Jul 28;11:1622. doi: 10.3389/fmicb.2020.01622. eCollection 2020.
Recent microbiome research has shown that soil fertility, plant-associated microbiome, and crop production can be affected by abiotic environmental parameters. The effect of aridity gradient on rhizosphere-soil (rhizosphere) and endosphere-root (endosphere) prokaryotic structure and diversity associated with cacti remain poorly investigated and understood. In the current study, next-generation sequencing approaches were used to characterize the diversity and composition of bacteria and archaea associated with the rhizosphere and endosphere of spineless cacti in four bioclimatic zones (humid, semi-arid, upper-arid, and lower-arid) in Tunisia. Our findings showed that bacterial and archaeal cactus microbiomes changed in inside and outside roots and along the aridity gradient. Plant compartment and aridity gradient were the influencing factors on the differentiation of microbial communities in rhizosphere and endosphere samples. The co-occurrence correlations between increased and decreased OTUs in rhizosphere and endosphere samples and soil parameters were determined according to the aridity gradient. , , , , and were identified as prevailing hubs and were considered as specific biomarkers taxa, which could play a crucial role on the aridity stress. Overall, our findings highlighted the prominence of the climatic aridity gradient on the equilibrium and diversity of microbial community composition in the rhizosphere and endosphere of cactus.
近期的微生物组研究表明,土壤肥力、与植物相关的微生物组以及作物产量会受到非生物环境参数的影响。干旱梯度对与仙人掌相关的根际土壤(根际)和根内(内生)原核生物结构及多样性的影响,目前仍缺乏充分的研究和了解。在本研究中,采用了新一代测序方法来表征突尼斯四个生物气候区(湿润、半干旱、上干旱和下干旱)中与无刺仙人掌的根际和内生菌相关的细菌和古菌的多样性及组成。我们的研究结果表明,细菌和古菌仙人掌微生物组在根的内外以及沿干旱梯度均发生了变化。植物区室和干旱梯度是影响根际和内生菌样本中微生物群落分化的因素。根据干旱梯度确定了根际和内生菌样本中增加和减少的操作分类单元(OTU)与土壤参数之间的共现相关性。 、 、 、 和 被确定为主要枢纽,并被视为特定的生物标志物分类群,它们可能在干旱胁迫中发挥关键作用。总体而言,我们的研究结果突出了气候干旱梯度对仙人掌根际和内生菌中微生物群落组成的平衡和多样性的重要影响。