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互补的基因组学、生物信息学和化学方法助力离子抑素(一种源自稀有海洋放线菌的线性聚酮化合物)的绝对结构鉴定。

Complementary Genomic, Bioinformatics, and Chemical Approaches Facilitate the Absolute Structure Assignment of Ionostatin, a Linear Polyketide from a Rare Marine-Derived Actinomycete.

作者信息

Kim Min Cheol, Winter Jaclyn M, Cullum Reiko, Li Zhifei, Fenical William

机构信息

Center for Marine Biotechnology and Biomedicine, Scripps Institution of Oceanography, University of California, San Diego, La Jolla, California 92093, United States.

Department of Medicinal Chemistry, University of Utah, Salt Lake City, Utah 84112, United States.

出版信息

ACS Chem Biol. 2020 Sep 18;15(9):2507-2515. doi: 10.1021/acschembio.0c00526. Epub 2020 Sep 9.

Abstract

A new linear type-1 polyketide, ionostatin (), has been fully defined using a combined genomic and bioinformatics approach coupled with confirmatory chemical analyses. The 41 carbon-containing polyether is the product of the 101 kbp biosynthetic cluster containing seven modular type-1 polyketide synthases. Ionostatin is composed of 15 chiral centers that were proposed using the stereospecificities installed by the different classes of ketoreductases and enoylreductases and confirmed by rigorous NMR analyses. Incorporated into the structure are two tetrahydrofuran rings that appear to be the product of stereospecific epoxidation, followed by stereospecific ring opening and cyclization. These transformations are proposed to be catalyzed by conserved enzymes analogous to those found in other bacterial-derived polyether biosynthetic clusters. Ionostatin shows moderate cancer cell cytotoxicity against U87 glioblastoma and SKOV3 ovarian carcinoma at 7.4 μg/mL.

摘要

一种新的线性1型聚酮化合物——离子抑素(),已通过基因组学与生物信息学相结合的方法并辅以确证性化学分析得以全面鉴定。这种含41个碳原子的聚醚是由包含7个模块型1聚酮合酶的101千碱基对生物合成簇产生的。离子抑素由15个手性中心组成,这些手性中心是根据不同类型的酮还原酶和烯酰还原酶所赋予的立体特异性提出的,并通过严格的核磁共振分析得以确证。其结构中包含两个四氢呋喃环,这两个环似乎是立体特异性环氧化反应的产物,随后是立体特异性的开环和环化反应。这些转化过程被认为是由与其他细菌来源的聚醚生物合成簇中发现的保守酶催化的。离子抑素在浓度为7.4微克/毫升时,对U87胶质母细胞瘤和SKOV3卵巢癌细胞显示出中等程度 的细胞毒性。

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