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开发一种 qPCR 方法,用于检测和定量绵羊粪便和组织中的 spp.。

Development of a qPCR for the detection and quantification of spp. in sheep feces and tissues.

机构信息

Faculty of Science, Sydney School of Veterinary Science, The University of Sydney, Camden, New South Wales, Australia.

出版信息

J Vet Diagn Invest. 2020 Nov;32(6):835-843. doi: 10.1177/1040638720952359. Epub 2020 Aug 28.

Abstract

spp. are common causes of disease in intensive livestock production systems, and contamination of foodstuffs is of significant concern for public health. Therefore, the identification and quantification of spp. is important for monitoring the level of fecal shedding or tissue colonization in infected animals and animal products. We developed and evaluated a quantitative PCR (qPCR) method on spiked sheep tissue and fecal samples for the detection and quantification of spp. Without the use of a pre-enrichment step, the qPCR limit of detection (LOD) results for sheep fecal (4 × 10-6 × 10 cfu/g) and tissue (4 × 10-4 × 10 cfu/g) samples were not adequate for detection purposes. With the inclusion of a 6-h pre-enrichment step in buffered peptone water (BPW), the LOD was 9 cfu/g (2.57 × 10 copies/g) in sheep feces, and 5.4 cfu/g (3.22 copies/g) sheep tissue. Comparison of the 6-h BPW qPCR method with a 24-h mannitol-selenite-cystine broth enrichment culture method using spiked samples revealed a sensitivity of 91% and 92%, respectively, and a specificity of 100% for both methods. The correlation was significant between the quantity (copies/mL) of spp. in BPW at 6 h and at 0 h, allowing semiquantitative analysis. Our results demonstrate that, following inclusion of a 6-h pre-enrichment step in BPW, qPCR is semiquantitative with improved LODs of spp. in sheep fecal and tissue samples.

摘要

spp. 是集约化畜牧生产系统中疾病的常见病因,食品污染对公共卫生有重大影响。因此, spp. 的鉴定和定量对于监测感染动物和动物产品的粪便脱落或组织定植水平非常重要。我们开发并评估了一种针对 spp. 的定量 PCR (qPCR) 方法,用于检测和定量绵羊组织和粪便样品。如果不使用预富集步骤,qPCR 在绵羊粪便(4×10-6×10 cfu/g)和组织(4×10-4×10 cfu/g)样品中的检测限 (LOD) 结果不足以用于检测目的。如果在缓冲蛋白胨水中包含 6 小时的预富集步骤,那么在绵羊粪便中的 LOD 为 9 cfu/g(2.57×10 拷贝/g),绵羊组织中的 LOD 为 5.4 cfu/g(3.22 拷贝/g)。使用含菌样品比较 6 小时 BPW qPCR 方法与 24 小时甘露醇-亚硒酸盐-胱氨酸肉汤富集培养方法,两种方法的灵敏度分别为 91%和 92%,特异性均为 100%。BPW 中 6 小时和 0 小时 spp. 的数量(拷贝/mL)之间存在显著相关性,允许进行半定量分析。我们的结果表明,在 BPW 中包含 6 小时的预富集步骤后,qPCR 具有半定量能力,提高了绵羊粪便和组织样品中 spp. 的 LOD。

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