从厌氧消化器中分离出的耶达赫梭菌EE-R19的基因组序列草图
Draft genome sequence of Clostridium jeddahense EE-R19 isolated from an anaerobic digester.
作者信息
Ziganshina Elvira E, Mohammed Waleed S, Ziganshin Ayrat M
机构信息
Department of Microbiology, Institute of Fundamental Medicine and Biology, Kazan (Volga Region) Federal University, Kremlyovskaya Str. 18, Kazan, 420008, Russia.
Department of Biotechnology, Faculty of Agriculture, Al-Azhar University, Cairo, 11651, Egypt.
出版信息
BMC Res Notes. 2020 Sep 3;13(1):413. doi: 10.1186/s13104-020-05247-3.
OBJECTIVES
Clostridium species of the order Clostridiales are mostly strictly anaerobic rod-shaped bacteria. They can be detected in a variety of environments, including the intestines of humans and animals, soil, water, and biogas reactors. Species of the genus Clostridium are widely used in various biotechnological processes, but several of them have been identified as significant human pathogens. Therefore, investigation at the genome level is necessary to provide valuable information about the ecology, genetics, and phylogenetic diversity of various Clostridium species.
DATA DESCRIPTION
In the present study, we report the whole genome sequence of Clostridium jeddahense strain EE-R19, which was isolated from a mesophilic anaerobic digester. The draft genome of C. jeddahense EE-R19 consisted of 59 contigs (> 500 bp), which amounted to 3,562,974 with an overall G + C content of 51.79%. The whole genome shotgun project of C. jeddahense EE-R19 has been deposited at DDBJ/ENA/GenBank under the accession number JAAVNF000000000.
目标
梭菌目梭菌属的细菌大多为严格厌氧的杆状菌。它们可在多种环境中被检测到，包括人类和动物的肠道、土壤、水以及沼气发酵罐。梭菌属的物种广泛应用于各种生物技术过程，但其中一些已被确定为重要的人类病原体。因此，有必要在基因组水平上进行研究，以提供有关各种梭菌物种的生态学、遗传学和系统发育多样性的有价值信息。
数据描述
在本研究中，我们报告了从嗜温厌氧消化器中分离出的耶达梭菌菌株EE-R19的全基因组序列。耶达梭菌EE-R19的基因组草图由59个重叠群（>500 bp）组成，共计3,562,974 bp，总体G+C含量为51.79%。耶达梭菌EE-R19的全基因组鸟枪法测序项目已保存在DDBJ/ENA/GenBank中，登录号为JAAVNF000000000。
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