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PEG 递送的 CRISPR-Cas9 核糖核蛋白系统用于玉米原生质体的基因编辑筛选。

PEG-Delivered CRISPR-Cas9 Ribonucleoproteins System for Gene-Editing Screening of Maize Protoplasts.

机构信息

CropScience Department, Federal University of Santa Catarina, Florianópolis 88034000, Brazil.

GenØk-Centre for Biosafety, Siva innovasjonssenter Postboks 6418, 9294 Tromsø, Norway.

出版信息

Genes (Basel). 2020 Sep 2;11(9):1029. doi: 10.3390/genes11091029.

Abstract

Clustered regularly interspaced short palindromic repeats (CRISPR)-Cas9 technology allows the modification of DNA sequences in vivo at the location of interest. Although CRISPR-Cas9 can produce genomic changes that do not require DNA vector carriers, the use of transgenesis for the stable integration of DNA coding for gene-editing tools into plant genomes is still the most used approach. However, it can generate unintended transgenic integrations, while Cas9 prolonged-expression can increase cleavage at off-target sites. In addition, the selection of genetically modified cells from millions of treated ones, especially plant cells, is still challenging. In a protoplast system, previous studies claimed that such pitfalls would be averted by delivering pre-assembled ribonucleoprotein complexes (RNPs) composed of purified recombinant Cas9 enzyme and in vitro transcribed guide RNA (gRNA) molecules. We, therefore, aimed to develop the first DNA-free protocol for gene-editing in maize and introduced RNPs into their protoplasts with polyethylene glycol (PEG) 4000. We performed an effective transformation of maize protoplasts using different gRNAs sequences targeting the inositol phosphate kinase gene, and by applying two different exposure times to RNPs. Using a low-cost Sanger sequencing protocol, we observed an efficiency rate of 0.85 up to 5.85%, which is equivalent to DNA-free protocols used in other plant species. A positive correlation was displayed between the exposure time and mutation frequency. The mutation frequency was gRNA sequence- and exposure time-dependent. In the present study, we demonstrated that the suitability of RNP transfection was proven as an effective screening platform for gene-editing in maize. This efficient and relatively easy assay method for the selection of gRNA suitable for the editing of the gene of interest will be highly useful for genome editing in maize, since the genome size and GC-content are large and high in the maize genome, respectively. Nevertheless, the large amplitude of mutations at the target site require scrutiny when checking mutations at off-target sites and potential safety concerns.

摘要

簇状规律间隔短回文重复 (CRISPR)-Cas9 技术允许在体内目标位置修改 DNA 序列。虽然 CRISPR-Cas9 可以产生不需要 DNA 载体载体的基因组变化,但使用转基因技术将基因编辑工具的 DNA 编码稳定整合到植物基因组中仍然是最常用的方法。然而,它可能会产生意外的转基因整合,而 Cas9 的延长表达会增加脱靶位点的切割。此外,从数百万个处理过的细胞中选择转基因细胞,尤其是植物细胞,仍然具有挑战性。在原生质体系统中,以前的研究声称,通过递送至由纯化的重组 Cas9 酶和体外转录的向导 RNA(gRNA)分子组成的预组装核糖核蛋白复合物(RNP),可以避免这些陷阱。因此,我们旨在开发第一个用于玉米基因编辑的无 DNA 方案,并使用聚乙二醇(PEG)4000 将 RNP 引入其原生质体。我们使用靶向肌醇磷酸盐激酶基因的不同 gRNA 序列并应用两种不同的 RNP 暴露时间,对玉米原生质体进行了有效的转化。使用低成本的 Sanger 测序方案,我们观察到效率从 0.85%到 5.85%不等,这与其他植物物种中使用的无 DNA 方案相当。暴露时间与突变频率之间显示出正相关。突变频率与 gRNA 序列和暴露时间有关。在本研究中,我们证明了 RNP 转染的适用性已被证明是玉米基因编辑的有效筛选平台。这种针对感兴趣基因编辑的 gRNA 筛选的高效且相对简单的检测方法对于玉米基因组编辑非常有用,因为玉米基因组的基因组大小和 GC 含量分别较大和较高。然而,在检查脱靶位点和潜在安全问题时,靶位点的突变幅度较大需要仔细检查。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6cf8/7564243/d4b458edb2cc/genes-11-01029-g001.jpg

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