Genomic Medicine Institute, Lerner Research Institute, Cleveland Clinic, Cleveland, Ohio 44195, United States.
Department of Molecular Medicine, Cleveland Clinic Lerner College of Medicine, Case Western Reserve University, Cleveland, Ohio 44195, United States.
J Proteome Res. 2020 Nov 6;19(11):4670-4677. doi: 10.1021/acs.jproteome.0c00397. Epub 2020 Sep 27.
The global pandemic of Coronavirus Disease 2019 (COVID-19), caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2), has led to the death of more than 675,000 worldwide and over 150,000 in the United States alone. However, there are currently no approved effective pharmacotherapies for COVID-19. Here, we combine homology modeling, molecular docking, molecular dynamics simulation, and binding affinity calculations to determine potential targets for toremifene, a selective estrogen receptor modulator which we have previously identified as a SARS-CoV-2 inhibitor. Our results indicate the possibility of inhibition of the spike glycoprotein by toremifene, responsible for aiding in fusion of the viral membrane with the cell membrane, via a perturbation to the fusion core. An interaction between the dimethylamine end of toremifene and residues Q954 and N955 in heptad repeat 1 (HR1) perturbs the structure, causing a shift from what is normally a long, helical region to short helices connected by unstructured regions. Additionally, we found a strong interaction between toremifene and the methyltransferase nonstructural protein (NSP) 14, which could be inhibitory to viral replication via its active site. These results suggest potential structural mechanisms for toremifene by blocking the spike protein and NSP14 of SARS-CoV-2, offering a drug candidate for COVID-19.
由严重急性呼吸综合征冠状病毒 2 (SARS-CoV-2)引起的 2019 年冠状病毒病 (COVID-19)全球大流行,已导致全球超过 67.5 万人死亡,仅美国就超过 15 万人死亡。然而,目前尚无针对 COVID-19 的批准有效的药物治疗方法。在这里,我们通过同源建模、分子对接、分子动力学模拟和结合亲和力计算,确定了托瑞米芬的潜在靶点,托瑞米芬是我们之前发现的一种 SARS-CoV-2 抑制剂,是一种选择性雌激素受体调节剂。我们的研究结果表明,托瑞米芬有可能通过干扰融合核心来抑制刺突糖蛋白,刺突糖蛋白有助于病毒膜与细胞膜融合。托瑞米芬的二甲胺端与七肽重复 1(HR1)中的残基 Q954 和 N955 之间的相互作用,使结构发生改变,使原本正常的长螺旋区域转变为短螺旋,通过无规则区域连接。此外,我们还发现托瑞米芬与甲基转移酶非结构蛋白(NSP)14 之间存在很强的相互作用,通过其活性位点可能抑制病毒复制。这些结果表明托瑞米芬通过阻断 SARS-CoV-2 的刺突蛋白和 NSP14 具有潜在的结构机制,为 COVID-19 提供了一种候选药物。