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冠状病毒的包膜蛋白的分子系统发育和错义突变。

Molecular phylogeny and missense mutations at envelope proteins across coronaviruses.

机构信息

Department of Mathematics, Pingla Thana Mahavidyalaya, Maligram, Paschim Medinipur, 721140, West Bengal, India.

Applied Statistics Unit, Indian Statistical Institute, Kolkata 700108, West Bengal, India.

出版信息

Genomics. 2020 Nov;112(6):4993-5004. doi: 10.1016/j.ygeno.2020.09.014. Epub 2020 Sep 12.

Abstract

Envelope (E) protein is one of the structural viroporins (76-109 amino acids long) present in the coronavirus. Sixteen sequentially different E-proteins were observed from a total of 4917 available complete SARS-CoV-2 genomes as on 18th June 2020 in the NCBI database. The missense mutations over the envelope protein across various coronaviruses of the β-genus were analyzed to know the immediate parental origin of the envelope protein of SARS-CoV-2. The evolutionary origin is also endorsed by the phylogenetic analysis of the envelope proteins comparing sequence homology as well as amino acid conservations.

摘要

包膜(E)蛋白是冠状病毒中存在的结构病毒孔蛋白之一(长 76-109 个氨基酸)。截至 2020 年 6 月 18 日,在 NCBI 数据库中观察到总共 4917 个可用的完整 SARS-CoV-2 基因组中存在 16 种不同的 E 蛋白。对β属各种冠状病毒的包膜蛋白进行错义突变分析,以了解 SARS-CoV-2 包膜蛋白的直接亲代起源。包膜蛋白的系统发育分析比较了序列同源性和氨基酸保守性,也支持了其进化起源。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/e329/7486180/d5e7f294a5e7/gr1_lrg.jpg

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