Amiri Ghanatsaman Zeinab, Wang Guo-Dong, Asadi Fozi Masood, Zhang Ya-Ping, Esmailizadeh Ali
Department of Animal Science, Faculty of Agriculture, Shahid Bahonar University of Kerman, PB 76169-133, Kerman, Iran.
Young Researchers Society, Shahid Bahonar University of Kerman, PB 76169-133, Kerman, Iran.
BMC Res Notes. 2020 Sep 16;13(1):436. doi: 10.1186/s13104-020-05271-3.
The data provided herein represent the whole-genome resequencing data related to three wolves and three Iranian local dogs. The understanding of genome evolution during animal domestication is an interesting subject in genome biology. Dog is an excellent model for understanding of domestication due to its considerable variety of behavioral and physical traits. The Zagros area of current day Iran has been identified as one of the initial centers of animal domestication. The availability of the complete genome sequences of Iranian local canids can be a valuable resource for researchers to address questions and testing hypotheses on the dog domestication process.
We collected blood samples from six Iranian local canids including two hunting dogs (Saluki breed), a mastiff dog (Qahderijani ecotype) and three wolves. We extracted genomic DNA from blood samples. Sequence data were produced using the Illumina HiSeq 2500 system. All sequence data are available in the National Genomics Data Center (NGDC), Genome Sequence Archive (GSA) database under the accession of CRA001324 and the National Center for Biotechnology Information (NCBI) under the accession of PRJNA639312. The short-read sequences with the mean depth of 16X were aligned to the dog reference genome (CanFam3.1) and achieved 99% coverage of the reference assembly. The obtained information from this experiment will be useful in evolutionary biology.
本文提供的数据代表了三只狼和三只伊朗本地犬的全基因组重测序数据。理解动物驯化过程中的基因组进化是基因组生物学中一个有趣的课题。由于狗具有相当多样的行为和身体特征，它是理解驯化过程的一个优秀模型。当今伊朗的扎格罗斯地区已被确定为动物驯化的最初中心之一。伊朗本地犬科动物完整基因组序列的可用性对于研究人员解决有关狗驯化过程的问题和检验假设可能是一种宝贵的资源。
我们从六只伊朗本地犬科动物中采集了血样，其中包括两只猎犬（萨路基犬种）、一只獒犬（卡赫代里贾尼生态型）和三只狼。我们从血样中提取了基因组DNA。使用Illumina HiSeq 2500系统生成序列数据。所有序列数据可在国家基因组数据中心（NGDC）的基因组序列存档（GSA）数据库中获取，登录号为CRA001324，也可在国家生物技术信息中心（NCBI）获取，登录号为PRJNA639312。平均深度为16X的短读序列与狗的参考基因组（CanFam3.1）进行比对，参考组装的覆盖率达到99%。从该实验中获得的信息将对进化生物学有用。
