Sanjuan-Szklarz W Fabiola, Woińska Magdalena, Domagała Sławomir, Dominiak Paulina M, Grabowsky Simon, Jayatilaka Dylan, Gutmann Matthias, Woźniak Krzysztof
Biological and Chemical Research Centre, Department of Chemistry, University of Warsaw, Żwirki i Wigury, Warszawa, Poland.
Department of Chemistry and Biochemistry, University of Bern, Freiestrasse 3, 3012 Bern, Switzerland.
IUCrJ. 2020 Aug 25;7(Pt 5):920-933. doi: 10.1107/S2052252520010441. eCollection 2020 Sep 1.
X-ray diffraction is the main source of three-dimensional structural information. In total, more than 1.5 million crystal structures have been refined and deposited in structural databanks (PDB, CSD and ICSD) to date. Almost 99.7% of them were obtained by approximating atoms as spheres within the independent atom model (IAM) introduced over a century ago. In this study, X-ray datasets for single crystals of hydrated α-oxalic acid were refined using several alternative electron density models that abandon the crude spherical approximation: the multipole model (MM), the transferable aspherical atom model (TAAM) and the Hirshfeld atom refinement (HAR) model as a function of the resolution of X-ray data. The aspherical models (MM, TAAM, HAR) give far more accurate and precise single-crystal X-ray results than IAM, sometimes identical to results obtained from neutron diffraction and at low resolution. Hence, aspherical approaches open new routes for improving existing structural information collected over the last century.
X射线衍射是三维结构信息的主要来源。迄今为止,总共已有超过150万个晶体结构在结构数据库(蛋白质数据银行、剑桥结构数据库和无机晶体结构数据库)中得到优化和存储。其中近99.7%是通过在一个多世纪前引入的独立原子模型(IAM)中将原子近似为球体而获得的。在本研究中,使用了几种摒弃粗糙球形近似的替代电子密度模型,对水合α-草酸单晶的X射线数据集进行了优化:多极模型(MM)、可转移非球形原子模型(TAAM)以及作为X射线数据分辨率函数的 Hirshfeld 原子精修(HAR)模型。与独立原子模型相比,非球形模型(MM、TAAM、HAR)给出的单晶X射线结果要精确得多,有时与中子衍射得到的结果相同,且在低分辨率下也是如此。因此,非球形方法为改进过去一个世纪收集的现有结构信息开辟了新途径。