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全基因组关联分析胰腺β细胞葡萄糖敏感性。

Genome-Wide Association Analysis of Pancreatic Beta-Cell Glucose Sensitivity.

机构信息

Translational and Clinical Research Institute, Newcastle University, Newcastle upon Tyne, UK.

Novo Nordisk Foundation Center for Basic Metabolic Research, Faculty of Health and Medical Sciences, University of Copenhagen, Copenhagen, Denmark.

出版信息

J Clin Endocrinol Metab. 2021 Jan 1;106(1):80-90. doi: 10.1210/clinem/dgaa653.

DOI:10.1210/clinem/dgaa653
PMID:32944759
原文链接:https://pmc.ncbi.nlm.nih.gov/articles/PMC7765651/
Abstract

CONTEXT

Pancreatic beta-cell glucose sensitivity is the slope of the plasma glucose-insulin secretion relationship and is a key predictor of deteriorating glucose tolerance and development of type 2 diabetes. However, there are no large-scale studies looking at the genetic determinants of beta-cell glucose sensitivity.

OBJECTIVE

To understand the genetic determinants of pancreatic beta-cell glucose sensitivity using genome-wide meta-analysis and candidate gene studies.

DESIGN

We performed a genome-wide meta-analysis for beta-cell glucose sensitivity in subjects with type 2 diabetes and nondiabetic subjects from 6 independent cohorts (n = 5706). Beta-cell glucose sensitivity was calculated from mixed meal and oral glucose tolerance tests, and its associations between known glycemia-related single nucleotide polymorphisms (SNPs) and genome-wide association study (GWAS) SNPs were estimated using linear regression models.

RESULTS

Beta-cell glucose sensitivity was moderately heritable (h2 ranged from 34% to 55%) using SNP and family-based analyses. GWAS meta-analysis identified multiple correlated SNPs in the CDKAL1 gene and GIPR-QPCTL gene loci that reached genome-wide significance, with SNP rs2238691 in GIPR-QPCTL (P value = 2.64 × 10-9) and rs9368219 in the CDKAL1 (P value = 3.15 × 10-9) showing the strongest association with beta-cell glucose sensitivity. These loci surpassed genome-wide significance when the GWAS meta-analysis was repeated after exclusion of the diabetic subjects. After correction for multiple testing, glycemia-associated SNPs in or near the HHEX and IGF2B2 loci were also associated with beta-cell glucose sensitivity.

CONCLUSION

We show that, variation at the GIPR-QPCTL and CDKAL1 loci are key determinants of pancreatic beta-cell glucose sensitivity.

摘要

背景

胰腺β细胞的葡萄糖敏感性是血糖-胰岛素分泌关系的斜率,是预测糖耐量恶化和 2 型糖尿病发展的关键指标。然而,目前还没有大规模的研究来探讨β细胞葡萄糖敏感性的遗传决定因素。

目的

通过全基因组荟萃分析和候选基因研究,了解胰腺β细胞葡萄糖敏感性的遗传决定因素。

设计

我们对来自 6 个独立队列(n=5706)的 2 型糖尿病患者和非糖尿病患者进行了全基因组荟萃分析,以评估β细胞葡萄糖敏感性。β细胞葡萄糖敏感性是通过混合餐和口服葡萄糖耐量试验计算得出的,已知与血糖相关的单核苷酸多态性(SNP)和全基因组关联研究(GWAS)SNP 与β细胞葡萄糖敏感性之间的关系,使用线性回归模型进行估计。

结果

使用 SNP 和基于家族的分析,β细胞葡萄糖敏感性具有中度的遗传力(h2 范围为 34%至 55%)。GWAS 荟萃分析在 CDKAL1 基因和 GIPR-QPCTL 基因座中发现了多个相关 SNP,达到了全基因组显著性水平,其中 GIPR-QPCTL 基因座中的 SNP rs2238691(P 值=2.64×10-9)和 CDKAL1 基因座中的 SNP rs9368219(P 值=3.15×10-9)与β细胞葡萄糖敏感性的相关性最强。当排除糖尿病患者后,重新进行 GWAS 荟萃分析,这些基因座的结果仍具有全基因组显著性。在进行多次检验校正后,HHEX 和 IGF2B2 基因座附近或附近的与血糖相关的 SNP 也与β细胞葡萄糖敏感性相关。

结论

我们表明,GIPR-QPCTL 和 CDKAL1 基因座的变异是胰腺β细胞葡萄糖敏感性的关键决定因素。

https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/018a28f23bca/dgaa653_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/d1802113a089/dgaa653_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/a988450bdab8/dgaa653_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/980d5c7f922b/dgaa653_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/018a28f23bca/dgaa653_fig4.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/d1802113a089/dgaa653_fig1.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/a988450bdab8/dgaa653_fig2.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/980d5c7f922b/dgaa653_fig3.jpg
https://cdn.ncbi.nlm.nih.gov/pmc/blobs/6412/7765651/018a28f23bca/dgaa653_fig4.jpg

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