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高流行地区 IncN 质粒介导非 CG258 菌株向其他菌株的传播动力学。

Dynamics of Dissemination from Non-CG258 to Other via IncN Plasmids in an Area of High Endemicity.

机构信息

Department of Microbiology and Parasitology, Bacteria and Cancer Group, Universidad de Antioquia, Medellín, Colombia

Faculad de Ciencias de la Salud, Biociencias Group, Institución Universitaria Colegio Mayor de Antioquia, Medellín, Colombia.

出版信息

Antimicrob Agents Chemother. 2020 Nov 17;64(12). doi: 10.1128/AAC.01743-20.

Abstract

Carbapenem-resistant (CRE) pose a significant threat to global public health. The most important mechanism for carbapenem resistance is the production of carbapenemases. carbapenemase (KPC) represents one of the main carbapenemases worldwide. Complex mechanisms of dissemination have been reported in Colombia, a country with a high endemicity of carbapenem resistance. Here, we characterized the dynamics of dissemination of gene among CRE infecting and colonizing patients in three hospitals localized in a highly endemic area of Colombia (2013 and 2015). We identified the genomic characteristics of KPC-producing recovered from patients infected/colonized and reconstructed the dynamics of dissemination of using both short and long read sequencing. We found that spread of among in the participating hospitals was due to intra- and interspecies horizontal gene transfer (HGT) mediated by promiscuous plasmids associated with transposable elements that was originated from a multispecies outbreak of KPC-producing in a neonatal intensive care unit. The plasmids were detected in isolates recovered in other units within the same hospital and nearby hospitals. The gene "epidemic" was driven by IncN-pST15-type plasmids carrying a novel Tnb structure and non-Tn elements (NTE) in spp., , spp., and spp. Of note, was found to coexist with in species of the complex. Our findings suggest that the main mechanism for dissemination of is HGT mediated by highly transferable plasmids among species of in infected/colonized patients, presenting a major challenge for public health interventions in developing countries such as Colombia.

摘要

耐碳青霉烯类肠杆菌科(CRE)对全球公共卫生构成重大威胁。碳青霉烯类耐药的最重要机制是产生碳青霉烯酶。碳青霉烯酶(KPC)代表了全球主要的碳青霉烯酶之一。在哥伦比亚,一个碳青霉烯类耐药高度流行的国家,已经报道了复杂的传播机制。在这里,我们对 3 家位于哥伦比亚高度流行地区的医院中感染和定植 CRE 的患者中 基因的传播动态进行了特征描述(2013 年和 2015 年)。我们确定了从感染/定植患者中分离出的产 KPC 的的基因组特征,并使用短读长和长读长测序重建了 传播的动态。我们发现,参与医院中 基因在 之间的传播是由于与转座元件相关的易位质粒介导的种内和种间水平基因转移(HGT)所致,该传播源于新生儿重症监护病房中发生的多物种产 KPC 爆发。这些质粒在同一医院内其他科室和附近医院中分离的菌株中均有发现。携带新型 Tnb 结构和非转座元件(NTE)的 IncN-pST15 型质粒驱动了基因“流行”,该质粒存在于 spp.、 spp.、 spp. 和 spp. 中。值得注意的是, 被发现与 复杂物种中的 共存。我们的研究结果表明,传播的主要机制是 HGT,易位质粒在感染/定植患者中的 种间具有高度可转移性,这对哥伦比亚等发展中国家的公共卫生干预措施构成了重大挑战。

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