Institute for Neuroscience and Medicine (INM-9) and Institute for Advanced Simulations (IAS-5) "Computational biomedicine", Forschungszentrum Jülich, 52425 Jülich, Germany.
Faculty of Mathematics, Computer Science and Natural Sciences, RWTH Aachen, 52062 Aachen, Germany.
Molecules. 2020 Sep 19;25(18):4299. doi: 10.3390/molecules25184299.
The translocator protein (TSPO) is a transmembrane protein present across the three domains of life. Its functional quaternary structure consists of one or more subunits. In mice, the dimer-to-monomer equilibrium is shifted in vitro towards the monomer by adding cholesterol, a natural component of mammalian membranes. Here, we present a coarse-grained molecular dynamics study on the protein in the presence of a physiological content and of an excess of cholesterol. The latter turns out to weaken the interfaces of the dimer by clusterizing mostly at the inter-monomeric space and pushing the contact residues apart. It also increases the compactness and the rigidity of the monomer. These two factors might play a role for the experimentally observed incremented stability of the monomeric form with increased content of cholesterol. Comparison with simulations on bacterial proteins suggests that the effect of cholesterol is much less pronounced for the latter than for the protein.
转位蛋白(TSPO)是一种跨三个生命领域存在的跨膜蛋白。其功能的四级结构由一个或多个亚基组成。在小鼠中,添加胆固醇(哺乳动物膜的天然成分)会使体外二聚体-单体平衡向单体移动。在这里,我们在存在生理含量和过量胆固醇的情况下对蛋白质进行了粗粒分子动力学研究。后者通过主要在单体间空间聚集并将接触残基推开,从而削弱二聚体的界面。它还增加了单体的紧凑性和刚性。这两个因素可能对实验观察到的胆固醇含量增加时单体形式稳定性增加起到了作用。与细菌蛋白的模拟比较表明,胆固醇对后者的影响远小于对 TSPO 蛋白的影响。